molecular dynamics

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1
Pharmacoinformatics-based identification of potential bioactive compounds against Ebola virus protein VP24.
Kwofie, Samuel K;Broni, Emmanuel;Teye, Joshua;Quansah, Erasmus;Issah, Ibrahim;Wilson, Michael D;Mill...
2019 Computers in biology and medicine DOI: S0010-4825(19)30291-... 382 views
2
SNP2SIM: a modular workflow for standardizing molecular simulation and functional analysis of protein variants.
McCoy, Matthew D;Shivakumar, Vikram;Nimmagadda, Sridhar;Jafri, Mohsin Saleet;Madhavan, Subha;
2019 BMC Bioinformatics DOI: 10.1186/s12859-019-2... 277 views
3
Potential inhibitors of the enzyme acetylcholinesterase and juvenile hormone with insecticidal activity: study of the binding mode via docking and molecular dynamics simulations.
Ramos, Ryan S;Macêdo, Williams J C;Costa, Josivan S;T de P da Silva, Carlos H;Rosa, Joaquín M C;da C...
2019 Journal of biomolecular structure & dynamics DOI: 10.1080/07391102.201... 305 views
4
Structural dataset from microsecond-long simulations of yeast mitofusin Fzo1 in the context of membrane docking.
Brandner, Astrid;De Vecchis, Dario;Baaden, Marc;Cohen, Mickael M;Taly, Antoine;
2019 Data in brief DOI: 10.1016/j.dib.2019.1... 290 views
5
Understanding adsorption behavior of α-chymotrypsin onto cation exchanger using all-atom molecular dynamics simulations.
Tournois, Marine;Mathé, Stéphane;André, Isabelle;Esque, Jérémy;Fernández, María A;
2019 journal of chromatography a DOI: S0021-9673(19)31152-... 277 views
6
Computational design, synthesis and evaluation of new sulphonamide derivatives targeting HIV-1 gp120.
Vangala, Radhika;Sivan, Sree Kanth;Peddi, Saikiran Reddy;Manga, Vijjulatha;
2019 journal of computer-aided molecular design DOI: 10.1007/s10822-019-0... 252 views
7
and MD Simulation Study to Explore Physicochemical Parameters for Antibacterial Peptide to Become Potent Anticancer Peptide.
Ma, Rui;Wong, Sin Wa;Ge, Lilin;Shaw, Chris;Siu, Shirley W I;Kwok, Hang Fai;
2020 molecular therapy oncolytics DOI: 10.1016/j.omto.2019.... 332 views
8
Free-energy landscape of molecular interactions between endothelin 1 and human endothelin type B receptor: fly-casting mechanism.
Higo, Junichi;Kasahara, Kota;Wada, Mitsuhito;Dasgupta, Bhaskar;Kamiya, Narutoshi;Hayami, Tomonori;Fu...
2019 protein engineering, design & selection : peds DOI: gzz029 234 views
9
Analysis of Soft Tissue Materials for Simulation Development.
Caldwell, Julia;Mooney, James J;
2019 simulation in healthcare : journal of the society... DOI: 10.1097/SIH.00000000... 247 views
10
Shallow Sand Equations: Real-Time Height Field Simulation of Dry Granular Flows.
Zhu, Kuixin;He, Xiaowei;Li, Sheng;Wang, Hongan;Wang, Guoping;
2019 ieee transactions on visualization and computer gr... DOI: 10.1109/TVCG.2019.29... 351 views
11
High-Performance Analysis of Biomolecular Containers to Measure Small-Molecule Transport, Transbilayer Lipid Diffusion, and Protein Cavities.
Bryer, Alexander J;Hadden-Perilla, Jodi A;Stone, John E;Perilla, Juan R;
2019 Journal of chemical information and modeling DOI: 10.1021/acs.jcim.9b0... 242 views
12
Three-dimensional cellular automaton simulation of coupled hydrogen porosity and microstructure during solidification of ternary aluminum alloys.
Gu, Cheng;Lu, Yan;Ridgeway, Colin D;Cinkilic, Emre;Luo, Alan A;
2019 Scientific reports DOI: 10.1038/s41598-019-4... 299 views
13
Pharmacophore-based designing of putative ROS-1 targeting agents for NSCLC.
Pathak, Disha;Choudhary, Shalki;Singh, Pankaj Kumar;Singh, Manjinder;Chadha, Navriti;Silakari, Om;
2020 Molecular diversity DOI: 10.1007/s11030-020-1... 296 views
14
AMBER parameters and topology data of 2-pentylpyrrole adduct of arginine with 4-hydroxy-2-nonenal.
Alviz-Amador, Antistio;Galindo-Murillo, Rodrigo;Pérez-González, Humberto;Rodríguez-Cavallo, Erika;Vi...
2020 Data in brief DOI: 10.1016/j.dib.2020.1... 210 views
15
Highly Charge Transport Thermally Activated Delayed Fluorescence Host Materials Based on Benzimidazole-Acridine Derivatives.
Lee, Ja Min;Lee, Sae Won;Kim, Young Sik;
2020 Journal of nanoscience and nanotechnology DOI: 10.1166/jnn.2020.178... 206 views
16
Vibrational Spectra of the Ruthenium-Tris-Bipyridine Dication and Its Reduced Form in Vacuo.
Munshi, Musleh Uddin;Martens, Jonathan;Berden, Giel;Oomens, Jos;
2020 the journal of physical chemistry a DOI: 10.1021/acs.jpca.0c0... 202 views
17
Kirkwood-Buff Integrals Using Molecular Simulation: Estimation of Surface Effects.
Dawass, Noura;Krüger, Peter;Schnell, Sondre K;Moultos, Othonas A;Economou, Ioannis G;Vlugt, Thijs J...
2020 Nanomaterials DOI: E771 175 views
18
Exploiting equilibrium-kinetic synergetic effect for separation of ethylene and ethane in a microporous metal-organic framework.
Ding, Qi;Zhang, Zhaoqiang;Yu, Cong;Zhang, Peixin;Wang, Jun;Cui, Xili;He, Chao-Hong;Deng, Shuguang;Xi...
2020 Science advances DOI: 10.1126/sciadv.aaz43... 169 views
19
Glyphosate adsorption on C fullerene in aqueous medium for water reservoir depollution.
Lima, J D M;Gomes, D S;Frazão, N F;Soares, D J B;Sarmento, R G;
2020 journal of molecular modeling DOI: 10.1007/s00894-020-0... 321 views
20
Synthesis, biological evaluation and molecular dynamics studies of 1,2,4-triazole clubbed Mannich bases.
Patel, Vatsal M;Patel, Navin B;Chan-Bacab, Manuel J;Rivera, Gildardo;
2018 Computational biology and chemistry DOI: S1476-9271(18)30430-... 205 views

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