Indexed in Journament

Genome biology

ISSN 1474-760X· EN

Journal Website Certificate of Indexing
Login or register to claim ownership or editorship of this journal.
42.3/100
Journament Score
#4,296
Journament Rank
24
Articles Indexed

About This Journal

Short Name Genome Biol
Abbreviated Name genome biol
ISSN 1474-760X
URL https://genomebiology.biomedcentral.com

Indexings

scopus ncbi doaj ulakbim sci

Tools & Certificate of Indexing

Certificate of Indexing
Quality Badge Widget - Embed on Your Website

Display your journal's verified indexing scores on your website with our self-contained widget.

One-Line JavaScript Embed:
Advantages: Single-line script, seamless DOM integration, clickable badges linking to full journal profile.
Standard iFrame Embed Code:
Widget Preview:

Publications Per Year

Articles (24)

2015
Extensive identification and analysis of conserved small ORFs in animals
Mackowiak SD;Zauber H;Bielow C;Thiel D;Kutz K;Calviello L;Mastrobuoni G;Rajewsky N;Kempa S;Selbach M;Obermayer B;;
Vol. 16 , pp. -
570 views Abstract
2019
GC-biased gene conversion conceals the prediction of the nearly neutral theory in avian genomes
Bolívar, Paulina;Guéguen, Laurent;Duret, Laurent;Ellegren, Hans;Mugal, Carina F.;
Vol. 20 , No. 1 , pp. 1-13
487 views Abstract
2014
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
Michael I Love;Wolfgang Huber;Simon Anders;Michael I Love;Wolfgang Huber;Simon Anders;
Vol. 15 , No. 12 , pp. 1-21
448 views DOI Abstract
2020
Gene content evolution in the arthropods.
Thomas, Gregg W C;Dohmen, Elias;Hughes, Daniel S T;Murali, Shwetha C;Poelchau, Monica;Glastad, Karl;Anstead, Clare A;Ayoub, Nadia A;Batterham, Phillip;Bellair, Michelle;Binford, Greta J;Chao, Hsu;Chen, Yolanda H;Childers, Christopher;Dinh, Huyen;Doddapaneni, Harsha Vardhan;Duan, Jian J;Dugan, Shannon;Esposito, Lauren A;Friedrich, Markus;Garb, Jessica;Gasser, Robin B;Goodisman, Michael A D;Gundersen-Rindal, Dawn E;Han, Yi;Handler, Alfred M;Hatakeyama, Masatsugu;Hering, Lars;Hunter, Wayne B;Ioannidis, Panagiotis;Jayaseelan, Joy C;Kalra, Divya;Khila, Abderrahman;Korhonen, Pasi K;Lee, Carol Eunmi;Lee, Sandra L;Li, Yiyuan;Lindsey, Amelia R I;Mayer, Georg;McGregor, Alistair P;McKenna, Duane D;Misof, Bernhard;Munidasa, Mala;Munoz-Torres, Monica;Muzny, Donna M;Niehuis, Oliver;Osuji-Lacy, Nkechinyere;Palli, Subba R;Panfilio, Kristen A;Pechmann, Matthias;Perry, Trent;Peters, Ralph S;Poynton, Helen C;Prpic, Nikola-Michael;Qu, Jiaxin;Rotenberg, Dorith;Schal, Coby;Schoville, Sean D;Scully, Erin D;Skinner, Evette;Sloan, Daniel B;Stouthamer, Richard;Strand, Michael R;Szucsich, Nikolaus U;Wijeratne, Asela;Young, Neil D;Zattara, Eduardo E;Benoit, Joshua B;Zdobnov, Evgeny M;Pfrender, Michael E;Hackett, Kevin J;Werren, John H;Worley, Kim C;Gibbs, Richard A;Chipman, Ariel D;Waterhouse, Robert M;Bornberg-Bauer, Erich;Hahn, Matthew W;Richards, Stephen;
Vol. 21 , No. 1 , pp. 15
433 views DOI Abstract
2015
Extensive identification and analysis of conserved small ORFs in animals
Sebastian D. Mackowiak;Henrik Zauber;Chris Bielow;Denise Thiel;Kamila Kutz;Lorenzo Calviello;Guido Mastrobuoni;Nikolaus Rajewsky;Stefan Kempa;Matthias Selbach;Benedikt Obermayer;Sebastian D. Mackowiak;Henrik Zauber;Chris Bielow;Denise Thiel;Kamila Kutz;Lorenzo Calviello;Guido Mastrobuoni;Nikolaus Rajewsky;Stefan Kempa;Matthias Selbach;Benedikt Obermayer;
Vol. 16 , No. 1 , pp. 1-21
430 views DOI Abstract
2013
TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
Daehwan Kim;Geo Pertea;Cole Trapnell;Harold Pimentel;Ryan Kelley;Steven L Salzberg;Daehwan Kim;Geo Pertea;Cole Trapnell;Harold Pimentel;Ryan Kelley;Steven L Salzberg;
Vol. 14 , No. 4 , pp. 1-13
395 views DOI Abstract
2006
GENCODE: producing a reference annotation for ENCODE
Harrow J;Denoeud F;Frankish A;Reymond A;Chen CK;Chrast J;Lagarde J;Gilbert JG;Storey R;Swarbreck D;Rossier C;Ucla C;Hubbard T;Antonarakis SE;Guigo R;;
Vol. 7 Suppl 1 , No. Suppl 1 , pp. -
389 views Abstract
2018
Tensorial blind source separation for improved analysis of multi-omic data.
Teschendorff, Andrew E;Jing, Han;Paul, Dirk S;Virta, Joni;Nordhausen, Klaus;
Vol. 19 , No. 1 , pp. 76
386 views DOI Abstract
2019
Reproducibility of CRISPR-Cas9 methods for generation of conditional mouse alleles: a multi-center evaluation.
Gurumurthy, Channabasavaiah B;O'Brien, Aidan R;Quadros, Rolen M;Adams, John;Alcaide, Pilar;Ayabe, Shinya;Ballard, Johnathan;Batra, Surinder K;Beauchamp, Marie-Claude;Becker, Kathleen A;Bernas, Guillaume;Brough, David;Carrillo-Salinas, Francisco;Chan, Wesley;Chen, Hanying;Dawson, Ruby;DeMambro, Victoria;D'Hont, Jinke;Dibb, Katharine M;Eudy, James D;Gan, Lin;Gao, Jing;Gonzales, Amy;Guntur, Anyonya R;Guo, Huiping;Harms, Donald W;Harrington, Anne;Hentges, Kathryn E;Humphreys, Neil;Imai, Shiho;Ishii, Hideshi;Iwama, Mizuho;Jonasch, Eric;Karolak, Michelle;Keavney, Bernard;Khin, Nay-Chi;Konno, Masamitsu;Kotani, Yuko;Kunihiro, Yayoi;Lakshmanan, Imayavaramban;Larochelle, Catherine;Lawrence, Catherine B;Li, Lin;Lindner, Volkhard;Liu, Xian-De;Lopez-Castejon, Gloria;Loudon, Andrew;Lowe, Jenna;Jerome-Majewska, Loydie A;Matsusaka, Taiji;Miura, Hiromi;Miyasaka, Yoshiki;Morpurgo, Benjamin;Motyl, Katherine;Nabeshima, Yo-Ichi;Nakade, Koji;Nakashiba, Toshiaki;Nakashima, Kenichi;Obata, Yuichi;Ogiwara, Sanae;Ouellet, Mariette;Oxburgh, Leif;Piltz, Sandra;Pinz, Ilka;Ponnusamy, Moorthy P;Ray, David;Redder, Ronald J;Rosen, Clifford J;Ross, Nikki;Ruhe, Mark T;Ryzhova, Larisa;Salvador, Ane M;Alam, Sabrina Shameen;Sedlacek, Radislav;Sharma, Karan;Smith, Chad;Staes, Katrien;Starrs, Lora;Sugiyama, Fumihiro;Takahashi, Satoru;Tanaka, Tomohiro;Trafford, Andrew W;Uno, Yoshihiro;Vanhoutte, Leen;Vanrockeghem, Frederique;Willis, Brandon J;Wright, Christian S;Yamauchi, Yuko;Yi, Xin;Yoshimi, Kazuto;Zhang, Xuesong;Zhang, Yu;Ohtsuka, Masato;Das, Satyabrata;Garry, Daniel J;Hochepied, Tino;Thomas, Paul;Parker-Thornburg, Jan;Adamson, Antony D;Yoshiki, Atsushi;Schmouth, Jean-Francois;Golovko, Andrei;Thompson, William R;Lloyd, K C Kent;Wood, Joshua A;Cowan, Mitra;Mashimo, Tomoji;Mizuno, Seiya;Zhu, Hao;Kasparek, Petr;Liaw, Lucy;Miano, Joseph M;Burgio, Gaetan;
Vol. 20 , No. 1 , pp. 171
384 views DOI Abstract
2019
MPRAnalyze: statistical framework for massively parallel reporter assays.
Ashuach, Tal;Fischer, David S;Kreimer, Anat;Ahituv, Nadav;Theis, Fabian J;Yosef, Nir;
Vol. 20 , No. 1 , pp. 183
384 views DOI Abstract
2025
catGRANULE 2.0: accurate predictions of liquid-liquid phase separating proteins at single amino acid resolution
Michele Monti; Jonathan Fiorentino; Dimitrios Miltiadis-Vrachnos; Giorgio Bini; Tiziana Cotrufo; Natalia Sanchez de Groot; Alexandros Armaos; G. Tartaglia
28 views DOI Abstract
2024
FORGEdb: a tool for identifying candidate functional variants and uncovering target genes and mechanisms for complex diseases.
Breeze, Charles E;Haugen, Eric;Gutierrez-Arcelus, María;Yao, Xiaozheng;Teschendorff, Andrew;Beck, Stephan;Dunham, Ian;Stamatoyannopoulos, John;Franceschini, Nora;Machiela, Mitchell J;Berndt, Sonja I;
Vol. 25 , No. 1 , pp. 3
110 views DOI Abstract
2024
Rapid and sensitive detection of genome contamination at scale with FCS-GX.
Astashyn, Alexander;Tvedte, Eric S;Sweeney, Deacon;Sapojnikov, Victor;Bouk, Nathan;Joukov, Victor;Mozes, Eyal;Strope, Pooja K;Sylla, Pape M;Wagner, Lukas;Bidwell, Shelby L;Brown, Larissa C;Clark, Karen;Davis, Emily W;Smith-White, Brian;Hlavina, Wratko;Pruitt, Kim D;Schneider, Valerie A;Murphy, Terence D;
Vol. 25 , No. 1 , pp. 60
190 views DOI Abstract
2022
TADA-a machine learning tool for functional annotation-based prioritisation of pathogenic CNVs.
Hertzberg, Jakob;Mundlos, Stefan;Vingron, Martin;Gallone, Giuseppe;
Vol. 23 , No. 1 , pp. 67
123 views DOI Abstract
2020
Gene content evolution in the arthropods.
Thomas, Gregg W C;Dohmen, Elias;Hughes, Daniel S T;Murali, Shwetha C;Poelchau, Monica;Glastad, Karl;Anstead, Clare A;Ayoub, Nadia A;Batterham, Phillip;Bellair, Michelle;Binford, Greta J;Chao, Hsu;Chen, Yolanda H;Childers, Christopher;Dinh, Huyen;Doddapaneni, Harsha Vardhan;Duan, Jian J;Dugan, Shannon;Esposito, Lauren A;Friedrich, Markus;Garb, Jessica;Gasser, Robin B;Goodisman, Michael A D;Gundersen-Rindal, Dawn E;Han, Yi;Handler, Alfred M;Hatakeyama, Masatsugu;Hering, Lars;Hunter, Wayne B;Ioannidis, Panagiotis;Jayaseelan, Joy C;Kalra, Divya;Khila, Abderrahman;Korhonen, Pasi K;Lee, Carol Eunmi;Lee, Sandra L;Li, Yiyuan;Lindsey, Amelia R I;Mayer, Georg;McGregor, Alistair P;McKenna, Duane D;Misof, Bernhard;Munidasa, Mala;Munoz-Torres, Monica;Muzny, Donna M;Niehuis, Oliver;Osuji-Lacy, Nkechinyere;Palli, Subba R;Panfilio, Kristen A;Pechmann, Matthias;Perry, Trent;Peters, Ralph S;Poynton, Helen C;Prpic, Nikola-Michael;Qu, Jiaxin;Rotenberg, Dorith;Schal, Coby;Schoville, Sean D;Scully, Erin D;Skinner, Evette;Sloan, Daniel B;Stouthamer, Richard;Strand, Michael R;Szucsich, Nikolaus U;Wijeratne, Asela;Young, Neil D;Zattara, Eduardo E;Benoit, Joshua B;Zdobnov, Evgeny M;Pfrender, Michael E;Hackett, Kevin J;Werren, John H;Worley, Kim C;Gibbs, Richard A;Chipman, Ariel D;Waterhouse, Robert M;Bornberg-Bauer, Erich;Hahn, Matthew W;Richards, Stephen;
Vol. 21 , No. 1 , pp. 15
433 views DOI Abstract
2019
Distinct epigenetic features of tumor-reactive CD8+ T cells in colorectal cancer patients revealed by genome-wide DNA methylation analysis.
Yang, Rui;Cheng, Sijin;Luo, Nan;Gao, Ranran;Yu, Kezhuo;Kang, Boxi;Wang, Li;Zhang, Qiming;Fang, Qiao;Zhang, Lei;Li, Chen;He, Aibin;Hu, Xueda;Peng, Jirun;Ren, Xianwen;Zhang, Zemin;
Vol. 21 , No. 1 , pp. 2
286 views DOI Abstract
2019
Paragraph: a graph-based structural variant genotyper for short-read sequence data.
Chen, Sai;Krusche, Peter;Dolzhenko, Egor;Sherman, Rachel M;Petrovski, Roman;Schlesinger, Felix;Kirsche, Melanie;Bentley, David R;Schatz, Michael C;Sedlazeck, Fritz J;Eberle, Michael A;
Vol. 20 , No. 1 , pp. 291
217 views DOI Abstract
2019
GC-biased gene conversion conceals the prediction of the nearly neutral theory in avian genomes
Bolívar, Paulina;Guéguen, Laurent;Duret, Laurent;Ellegren, Hans;Mugal, Carina F.;
Vol. 20 , No. 1 , pp. 1-13
487 views Abstract
2019
MMSplice: modular modeling improves the predictions of genetic variant effects on splicing
Cheng, Jun;Nguyen, Thi Yen Duong;Cygan, Kamil J.;Çelik, Muhammed Hasan;Fairbrother, William G.;Avsec, žiga;Gagneur, Julien;
Vol. 20 , No. 1 , pp. 1-15
270 views Abstract
2019
MPRAnalyze: statistical framework for massively parallel reporter assays.
Ashuach, Tal;Fischer, David S;Kreimer, Anat;Ahituv, Nadav;Theis, Fabian J;Yosef, Nir;
Vol. 20 , No. 1 , pp. 183
384 views DOI Abstract
42
Overall
Below Average
31
35
30
40
37
75
0
0
0
0
0
Journament

Overall Quality Score

42.3/100

Tier: Below Average

The Journament Overall Quality Score is a comprehensive metric that evaluates academic journals across multiple dimensions including engagement, accessibility, diversity, innovation, and community impact.

This score helps researchers, institutions, and publishers understand the holistic quality and impact of a journal beyond traditional metrics.

Engagement Score

30.7/100

Measures user interactions, views, citations, and community involvement with this journal's content.

Higher engagement scores indicate that the journal's content is actively being read, cited, and discussed within the academic community.

Accessibility Score

35.0/100

Evaluates how easily researchers can access journal content, including open access availability, ISSN registration, and indexing.

This metric considers factors such as paywalls, open access policies, and availability across different academic databases and search engines.

Diversity Score

30.0/100

Assesses geographic and institutional diversity of authors, editorial board composition, and topic breadth.

A diverse journal publishes work from various geographic regions, institutions, and covers a broad range of topics within its field.

Innovation Score

40.0/100

Evaluates research novelty, interdisciplinary work, and emerging topics based on AI analysis of article abstracts.

This score reflects how much the journal publishes cutting-edge research, explores new methodologies, and bridges different academic disciplines.

Community Impact Score

37.0/100

Measures scholarly contribution and real-world applications of published research.

This metric evaluates how the journal's research translates into practical applications, policy changes, and benefits to society beyond academia.

Timeliness Score

75.0/100

Evaluates recent publication activity, publication frequency, and currency of research topics.

Higher scores indicate consistent publishing schedules and timely coverage of current research trends.

Ethics & Transparency Score

0.0/100

Research Integrity (10% weight)

Assesses COPE standards compliance, ethical considerations in research, transparency in methodologies, and reproducibility practices.

This metric ensures the journal maintains high ethical standards and promotes transparent, trustworthy research.

Content Quality Score

0.0/100

Academic Rigor (20% weight) + Methodology Quality (12%)

Evaluates research methodology soundness, statistical rigor, theoretical framework strength, appropriateness of research methods, data quality, and clarity & readability.

This comprehensive metric ensures published research meets the highest academic standards.

Editorial Diversity Score

0.0/100

Author Diversity + Interdisciplinary Value (8%)

Measures geographic diversity of authors, institutional variety, editorial board composition, and cross-disciplinary connections.

Diverse editorial teams bring varied perspectives and reduce bias in academic publishing.

Publication Regularity Score

0.0/100

Assesses consistency of publication schedule, frequency stability, and predictable output patterns.

Regular publication schedules indicate reliable journal operations and consistent workflow management.

Geographic Reach Score

0.0/100

Evaluates international author representation, global readership distribution, and cross-border research collaboration.

Wide geographic reach indicates global impact and international recognition of the journal's research.