phylogenomics

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1
Extracting Phylogenetic Signal from Phylogenomic Data: Higher-Level Relationships of the Nightbirds (Strisores).
White, Noor D;Braun, Michael J;
2019 Molecular phylogenetics and evolution DOI: S1055-7903(19)30351-... 242 views
2
Genome-based classification of Micromonospora craterilacus sp. nov., a novel actinobacterium isolated from Nemrut Lake.
Ay, Hilal;Nouioui, Imen;Klenk, Hans-Peter;Cetin, Demet;Igual, José M;Sahin, Nevzat;Isik, Kamil;
2020 antonie van leeuwenhoek DOI: 10.1007/s10482-020-0... 204 views
3
Comparative genomic analysis reveals starvation survival systems in Methanothermobacter thermautotrophicus ΔH.
Prathiviraj, R;Chellapandi, P;
2020 Anaerobe DOI: S1075-9964(20)30072-... 192 views
4
Genetic redundancy in iron and manganese transport in the metabolically versatile bacterium TIE-1.
Singh, Rajesh;Ranaivoarisoa, Tahina Onina;Gupta, Dinesh;Bai, Wei;Bose, Arpita;
2020 Applied and environmental microbiology DOI: AEM.01057-20 221 views
5
Metagenomic microbial community profiling using unique clade-specific marker genes
Nicola Segata;Levi Waldron;Annalisa Ballarini;Vagheesh Narasimhan;Olivier Jousson;Curtis Huttenhower...
2012 Nature Methods DOI: doi:10.1038/nmeth.20... 249 views
6
bioinformatic workflows for generating complete plastid genome sequences—an example from cabomba (cabombaceae) in the context of the phylogenomic analysis of the water-lily clade
;Michael Gruenstaeudl;Nico Gerschler;Thomas Borsch
2018 The Science of the total environment DOI: 10.3390/life8030025 231 views
7
phylogenomic analysis and dynamic evolution of chloroplast genomes in salicaceae
;Yuan Huang;Yuan Huang;Jun Wang;Yongping Yang;Chuanzhu Fan;Jiahui Chen;Jiahui Chen
2017 phytochemistry letters DOI: 10.3389/fpls.2017.01... 191 views
8
in-silico taxonomic classification of 373 genomes reveals species misidentification and new genospecies within the genus pseudomonas
;Phuong N. Tran;Phuong N. Tran;Michael A. Savka;Han Ming Gan;Han Ming Gan;Han Ming Gan
2017 journal of magnetic resonance (san diego, calif :... DOI: 10.3389/fmicb.2017.0... 215 views
9
benchmark datasets for phylogenomic pipeline validation, applications for foodborne pathogen surveillance
;Ruth E. Timme;Hugh Rand;Martin Shumway;Eija K. Trees;Mustafa Simmons;Richa Agarwala;Steven Davis;Gl...
2017 pediatrics DOI: 10.7717/peerj.3893 411 views
10
a phylogenomic and molecular markers based analysis of the class acidimicrobiia
;Danyu Hu;Danyu Hu;Guihong Cha;Guihong Cha;Beile Gao
2018 journal of magnetic resonance (san diego, calif :... DOI: 10.3389/fmicb.2018.0... 203 views
11
archaeal clusters of orthologous genes (arcogs): an update and application for analysis of shared features between thermococcales, methanococcales, and methanobacteriales
;Kira S. Makarova;Yuri I. Wolf;Eugene V. Koonin
2015 The Science of the total environment DOI: 10.3390/life5010818 187 views
12
Disentangling serial chloroplast captures in willows.
Gambhir, Diksha; Sanderson, Brian J; Guo, Minghao; Hu, Nan; Khanal, Ashmita; Cronk, Quentin; Ma, Tao...
2025 American journal of botany DOI: 10.1002/ajb2.70039 21 views

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model selection gc content strisores nightbirds ultraconserved elements polyphasic taxonomy nemrut lake comparative genomics starvation co dehydrogenase methanogenesis energetic metabolism methanothermobacter metagenomics bioinformatics dna sequencing National Center for Biotechnology Information NCBI NLM