phylogenomics

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1
Extracting Phylogenetic Signal from Phylogenomic Data: Higher-Level Relationships of the Nightbirds (Strisores).
White, Noor D;Braun, Michael J;
2019 Molecular phylogenetics and evolution DOI: S1055-7903(19)30351-... 231 views
2
Genome-based classification of Micromonospora craterilacus sp. nov., a novel actinobacterium isolated from Nemrut Lake.
Ay, Hilal;Nouioui, Imen;Klenk, Hans-Peter;Cetin, Demet;Igual, José M;Sahin, Nevzat;Isik, Kamil;
2020 antonie van leeuwenhoek DOI: 10.1007/s10482-020-0... 201 views
3
Comparative genomic analysis reveals starvation survival systems in Methanothermobacter thermautotrophicus ΔH.
Prathiviraj, R;Chellapandi, P;
2020 Anaerobe DOI: S1075-9964(20)30072-... 187 views
4
Genetic redundancy in iron and manganese transport in the metabolically versatile bacterium TIE-1.
Singh, Rajesh;Ranaivoarisoa, Tahina Onina;Gupta, Dinesh;Bai, Wei;Bose, Arpita;
2020 Applied and environmental microbiology DOI: AEM.01057-20 217 views
5
Metagenomic microbial community profiling using unique clade-specific marker genes
Nicola Segata;Levi Waldron;Annalisa Ballarini;Vagheesh Narasimhan;Olivier Jousson;Curtis Huttenhower...
2012 Nature Methods DOI: doi:10.1038/nmeth.20... 220 views
6
bioinformatic workflows for generating complete plastid genome sequences—an example from cabomba (cabombaceae) in the context of the phylogenomic analysis of the water-lily clade
;Michael Gruenstaeudl;Nico Gerschler;Thomas Borsch
2018 The Science of the total environment DOI: 10.3390/life8030025 228 views
7
phylogenomic analysis and dynamic evolution of chloroplast genomes in salicaceae
;Yuan Huang;Yuan Huang;Jun Wang;Yongping Yang;Chuanzhu Fan;Jiahui Chen;Jiahui Chen
2017 phytochemistry letters DOI: 10.3389/fpls.2017.01... 190 views
8
in-silico taxonomic classification of 373 genomes reveals species misidentification and new genospecies within the genus pseudomonas
;Phuong N. Tran;Phuong N. Tran;Michael A. Savka;Han Ming Gan;Han Ming Gan;Han Ming Gan
2017 journal of magnetic resonance (san diego, calif :... DOI: 10.3389/fmicb.2017.0... 213 views
9
benchmark datasets for phylogenomic pipeline validation, applications for foodborne pathogen surveillance
;Ruth E. Timme;Hugh Rand;Martin Shumway;Eija K. Trees;Mustafa Simmons;Richa Agarwala;Steven Davis;Gl...
2017 pediatrics DOI: 10.7717/peerj.3893 404 views
10
a phylogenomic and molecular markers based analysis of the class acidimicrobiia
;Danyu Hu;Danyu Hu;Guihong Cha;Guihong Cha;Beile Gao
2018 journal of magnetic resonance (san diego, calif :... DOI: 10.3389/fmicb.2018.0... 200 views
11
archaeal clusters of orthologous genes (arcogs): an update and application for analysis of shared features between thermococcales, methanococcales, and methanobacteriales
;Kira S. Makarova;Yuri I. Wolf;Eugene V. Koonin
2015 The Science of the total environment DOI: 10.3390/life5010818 176 views
12
Disentangling serial chloroplast captures in willows.
Gambhir, Diksha; Sanderson, Brian J; Guo, Minghao; Hu, Nan; Khanal, Ashmita; Cronk, Quentin; Ma, Tao...
2025 American journal of botany DOI: 10.1002/ajb2.70039 19 views

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model selection gc content strisores nightbirds ultraconserved elements polyphasic taxonomy nemrut lake comparative genomics starvation co dehydrogenase methanogenesis energetic metabolism methanothermobacter metagenomics bioinformatics dna sequencing genome assembly plastid genome standardization