Genome-based classification of Micromonospora craterilacus sp. nov., a novel actinobacterium isolated from Nemrut Lake.

Clicks: 302
ID: 96057
2020
Article Quality & Performance Metrics
Overall Quality
Not rated
Combines reader engagement with the AI quality analysis. This article has not been analysed, so there is no overall score — reader engagement is measured and shown alongside.
AI Quality Assessment
Not analyzed
Readership in this journal
Emerging

Ranked #23 of 260 articles by views in antonie van leeuwenhoek

Most read Least read

Bar heights use a square-root scale. Only the 120 most-read articles are drawn; the journal has 260 in total.

Mint this article as an NFT
Not yet minted

Create a permanent, verifiable on-chain record of this article on the Scimatic Network. The NFT is held in your Journament account, and you can withdraw it to your own wallet at any time.

5 SUSD one-off · no wallet required
Sign in to mint
Abstract
A novel actinobacterial strain, designated NA12, was isolated from coastal sediment sample of Nemrut Lake, a crater lake in eastern Anatolia, Turkey. The taxonomic position of the strain was established using a polyphasic approach. Cultural and chemotaxonomic characteristics of the strain were consistent with its classification within the family Micromonosporaceae. The 16S rRNA gene sequence analysis of strain NA12 showed that the strain closely related to M. radicis AZ1-13, M. zingiberis PLAI 1-1, M. craniella LHW63014 and M. endophytica 202201 with pairwise sequence identity values ranging from 99.4 to 99.3%. Digital DNA-DNA hybridization values between strain NA12 and the closely related type strains were ranged from 41.0 to 18.3% while the average nucleotide identity values were between 87.3 and 86.5%, which are well below the designed cut-off points of 70 and 95%, respectively. The G + C content of genomic DNA was 71.5%. Whole-cell hydrolysates of strain NA12 contained 3-hydroxydiaminopimelic acid and meso-diaminopimelic acid. Cell-wall sugars were composed of arabinose, fucose, glucose, mannose, rhamnose and xylose. The polar lipid profile contained phosphatidylethanolamine, diphosphatidylglycerol, phosphatidylinositol, phosphatidylglycerol, glycophospholipid, amino-phospholipid and two unidentified phospholipids. The predominant menaquinones were MK-9(H) and MK-9(H). Major fatty acids were iso-C and Cω8c. Based upon the consensus of phenotypic and phylogenetic analyses as well as whole genome comparisons, strain NA12 (DSM 100982 = KCTC 39647) is proposed to represent the type strain of a novel species, Micromonospora craterilacus sp. nov.
Reference Key
ay2020genomebasedantonie Use this key to autocite in the manuscript while using SciMatic Manuscript Manager or Thesis Manager
Authors Ay, Hilal;Nouioui, Imen;Klenk, Hans-Peter;Cetin, Demet;Igual, José M;Sahin, Nevzat;Isik, Kamil;
Journal antonie van leeuwenhoek
Year 2020
DOI
10.1007/s10482-020-01390-w
URL
Keywords
polyphasic taxonomy phylogenomics nemrut lake

Citations

No citations found. To add a citation, contact the admin at info@scimatic.org

Comments

No comments yet. Be the first to comment on this article.