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Briefings in bioinformatics

ISSN 1477-4054· EN

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37.2/100
Journament Score
#11,475
Journament Rank
55
Articles Indexed

About This Journal

Short Name Brief Bioinform
Abbreviated Name brief bioinformatics
ISSN 1477-4054
URL http://bib.oxfordjournals.org

Indexings

ncbi ulakbim sci

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Publications Per Year

Articles (55)

2019
PRISMOID: a comprehensive 3D structure database for post-translational modifications and mutations with functional impact.
Li, Fuyi;Fan, Cunshuo;Marquez-Lago, Tatiana T;Leier, André;Revote, Jerico;Jia, Cangzhi;Zhu, Yan;Smith, A Ian;Webb, Geoffrey I;Liu, Quanzhong;Wei, Leyi;Li, Jian;Song, Jiangning;
458 views DOI Abstract
2019
Harmonizing semantic annotations for computational models in biology.
Neal, Maxwell Lewis;König, Matthias;Nickerson, David;Mısırlı, Göksel;Kalbasi, Reza;Dräger, Andreas;Atalag, Koray;Chelliah, Vijayalakshmi;Cooling, Michael T;Cook, Daniel L;Crook, Sharon;de Alba, Miguel;Friedman, Samuel H;Garny, Alan;Gennari, John H;Gleeson, Padraig;Golebiewski, Martin;Hucka, Michael;Juty, Nick;Myers, Chris;Olivier, Brett G;Sauro, Herbert M;Scharm, Martin;Snoep, Jacky L;Touré, Vasundra;Wipat, Anil;Wolkenhauer, Olaf;Waltemath, Dagmar;
Vol. 20 , No. 2 , pp. 540-550
387 views DOI Abstract
2019
A novel molecular representation with BiGRU neural networks for learning atom.
Lin, Xuan;Quan, Zhe;Wang, Zhi-Jie;Huang, Huang;Zeng, Xiangxiang;
377 views DOI Abstract
2019
Evaluation of single-cell classifiers for single-cell RNA sequencing data sets.
Zhao, Xinlei;Wu, Shuang;Fang, Nan;Sun, Xiao;Fan, Jue;
365 views DOI Abstract
2009
A pitfall of wiki solution for biological databases
Arita M;;
Vol. 10 , No. 3 , pp. -
363 views Abstract
2019
iLearn: an integrated platform and meta-learner for feature engineering, machine-learning analysis and modeling of DNA, RNA and protein sequence data.
Chen, Zhen;Zhao, Pei;Li, Fuyi;Marquez-Lago, Tatiana T;Leier, André;Revote, Jerico;Zhu, Yan;Powell, David R;Akutsu, Tatsuya;Webb, Geoffrey I;Chou, Kuo-Chen;Smith, A Ian;Daly, Roger J;Li, Jian;Song, Jiangning;
346 views DOI Abstract
2020
Deep learning-based clustering approaches for bioinformatics.
Karim, Md Rezaul;Beyan, Oya;Zappa, Achille;Costa, Ivan G;Rebholz-Schuhmann, Dietrich;Cochez, Michael;Decker, Stefan;
339 views DOI Abstract
2020
Semantic similarity and machine learning with ontologies.
Kulmanov, Maxat;Smaili, Fatima Zohra;Gao, Xin;Hoehndorf, Robert;
337 views DOI Abstract
2019
DTI-CDF: a cascade deep forest model towards the prediction of drug-target interactions based on hybrid features.
Chu, Yanyi;Kaushik, Aman Chandra;Wang, Xiangeng;Wang, Wei;Zhang, Yufang;Shan, Xiaoqi;Salahub, Dennis Russell;Xiong, Yi;Wei, Dong-Qing;
331 views DOI Abstract
2019
Comprehensive review and assessment of computational methods for predicting RNA post-transcriptional modification sites from RNA sequences.
Chen, Zhen;Zhao, Pei;Li, Fuyi;Wang, Yanan;Smith, A Ian;Webb, Geoffrey I;Akutsu, Tatsuya;Baggag, Abdelkader;Bensmail, Halima;Song, Jiangning;
325 views DOI Abstract
2026
scGenoByte: a GenoByte embedding transformer with biological priors for cell type annotation
Jiongsen Yao, Yan Xu, Jinjin Ma, Wenjun Shen, Si Wu
9 views DOI Abstract
2026
METEOR: a data-adaptive Mendelian randomization method for powerful detection of shared and specific exposures underlying multiple outcomes
Liye Zhang, Ran Yan, Weiming Gong, Xiang Zhou, Lu Liu, Zhongshang Yuan
8 views DOI Abstract
2026
Exploring per-base quality scores as a surrogate marker of cell-free DNA fragmentome
Hadas Volkov, Maria Raitses-Gurevich, Meitar Grad, Rani Shlayem, Dev Leibowitz, Tami Rubinek, Talia Golan, Noam Shomron
6 views DOI Abstract
2026
FerroScore: a statistical approach for quantifying tumor-related ferroptosis based on omics data
Jiaqi Teng, Qi Gong, Zhaohang Cai, Tianshou Zhou
7 views DOI Abstract
2026
Literature-informed gene extraction and ranking for multimodal data fusion
Marietta Hamberger, Silke D Werle, Johann M. Kraus, Hans A. Kestler
8 views DOI Abstract
2026
SA-MTP: a structure-aware framework for multifunctional therapeutic peptide annotation
Wenping Yu, Zhewen Li, Wei Xu, Yuanzhang Zhao, Nan Sun
8 views DOI Abstract
2023
Census of exposed aggregation-prone regions in proteomes.
Falgarone, Théo; Villain, Etienne; Richard, Francois; Osmanli, Zarifa; Kajava, Andrey V
Vol. 24
77 views DOI Abstract
2023
DMPPred: a tool for identification of antigenic regions responsible for inducing type 1 diabetes mellitus.
Kumar, Nishant;Patiyal, Sumeet;Choudhury, Shubham;Tomer, Ritu;Dhall, Anjali;Raghava, Gajendra P S;
Vol. 24 , No. 1
94 views DOI Abstract
2023
Advances in the field of phage-based therapy with special emphasis on computational resources.
Bajiya, Nisha;Dhall, Anjali;Aggarwal, Suchet;Raghava, Gajendra P S;
Vol. 24 , No. 1
103 views DOI Abstract
2021
oncoPredict: an R package for predicting <i>in vivo</i> or cancer patient drug response and biomarkers from cell line screening data
Danielle Maeser, Robert F. Gruener, R. Stephanie Huang
6 views DOI Abstract
37
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Journament

Overall Quality Score

37.2/100

Tier: Poor

The Journament Overall Quality Score is a comprehensive metric that evaluates academic journals across multiple dimensions including engagement, accessibility, diversity, innovation, and community impact.

This score helps researchers, institutions, and publishers understand the holistic quality and impact of a journal beyond traditional metrics.

Engagement Score

31.1/100

Measures user interactions, views, citations, and community involvement with this journal's content.

Higher engagement scores indicate that the journal's content is actively being read, cited, and discussed within the academic community.

Accessibility Score

35.0/100

Evaluates how easily researchers can access journal content, including open access availability, ISSN registration, and indexing.

This metric considers factors such as paywalls, open access policies, and availability across different academic databases and search engines.

Diversity Score

30.0/100

Assesses geographic and institutional diversity of authors, editorial board composition, and topic breadth.

A diverse journal publishes work from various geographic regions, institutions, and covers a broad range of topics within its field.

Innovation Score

40.0/100

Evaluates research novelty, interdisciplinary work, and emerging topics based on AI analysis of article abstracts.

This score reflects how much the journal publishes cutting-edge research, explores new methodologies, and bridges different academic disciplines.

Community Impact Score

34.0/100

Measures scholarly contribution and real-world applications of published research.

This metric evaluates how the journal's research translates into practical applications, policy changes, and benefits to society beyond academia.

Timeliness Score

65.0/100

Evaluates recent publication activity, publication frequency, and currency of research topics.

Higher scores indicate consistent publishing schedules and timely coverage of current research trends.

Ethics & Transparency Score

0.0/100

Research Integrity (10% weight)

Assesses COPE standards compliance, ethical considerations in research, transparency in methodologies, and reproducibility practices.

This metric ensures the journal maintains high ethical standards and promotes transparent, trustworthy research.

Content Quality Score

0.0/100

Academic Rigor (20% weight) + Methodology Quality (12%)

Evaluates research methodology soundness, statistical rigor, theoretical framework strength, appropriateness of research methods, data quality, and clarity & readability.

This comprehensive metric ensures published research meets the highest academic standards.

Editorial Diversity Score

0.0/100

Author Diversity + Interdisciplinary Value (8%)

Measures geographic diversity of authors, institutional variety, editorial board composition, and cross-disciplinary connections.

Diverse editorial teams bring varied perspectives and reduce bias in academic publishing.

Publication Regularity Score

0.0/100

Assesses consistency of publication schedule, frequency stability, and predictable output patterns.

Regular publication schedules indicate reliable journal operations and consistent workflow management.

Geographic Reach Score

0.0/100

Evaluates international author representation, global readership distribution, and cross-border research collaboration.

Wide geographic reach indicates global impact and international recognition of the journal's research.