metagenomic

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1
A multi-source domain annotation pipeline for quantitative metagenomic and metatranscriptomic functional profiling.
Ugarte, Ari;Vicedomini, Riccardo;Bernardes, Juliana;Carbone, Alessandra;
2018 microbiome DOI: 10.1186/s40168-018-0... 289 views
2
Phylogeny-corrected identification of microbial gene families relevant to human gut colonization.
Bradley, Patrick H;Nayfach, Stephen;Pollard, Katherine S;
2018 PLoS computational biology DOI: 10.1371/journal.pcbi... 210 views
3
metaboot: a machine learning framework of taxonomical biomarker discovery for different microbial communities based on metagenomic data
;Xiaojun Wang;Xiaoquan Su;Xinping Cui;Kang Ning
2015 pediatrics DOI: 10.7717/peerj.993 237 views
4
Microbe-mediated stress resistance in plants: the roles played by core and stress-specific microbiota.
Liu, Sijia; Wu, Jiadong; Cheng, Zhen; Wang, Haofei; Jin, Zhelun; Zhang, Xiang; Zhang, Deqiang; Xie,...
2025 microbiome DOI: 10.1186/s40168-025-0... 10 views
5
Abundance of Plant-Associated Correlates with Immunostimulatory Activity of .
Kalpana, Kriti;Montenegro, Diego;Romero, Giovanna;Peralta, Ximena;Akgol Oksuz, Betul;Heguy, Adriana;...
2019 medicines (basel, switzerland) DOI: E62 307 views
6
SqueezeMeta, A Highly Portable, Fully Automatic Metagenomic Analysis Pipeline.
Tamames, Javier;Puente-Sánchez, Fernando;
2018 Frontiers in microbiology DOI: 10.3389/fmicb.2018.0... 221 views
7
Microbial metagenomes and metatranscriptomes during a coastal phytoplankton bloom.
Nowinski, Brent;Smith, Christa B;Thomas, Courtney M;Esson, Kaitlin;Marin, Roman;Preston, Christina M...
2019 scientific data DOI: 10.1038/s41597-019-0... 265 views
8
Microbiome disruption and recovery in the fish Gambusia affinis following exposure to broad-spectrum antibiotic
Jeanette M Carlson;Annie B Leonard;Embriette R Hyde;Joseph F Petrosino;Todd P Primm and
2017 Infection and drug resistance DOI: 10.2147/IDR.S129055 247 views
9
Probiotics and blood pressure: current insights
Aditya Upadrasta;Ratna Sudha Madempudi and
2016 integrated blood pressure control DOI: 10.2147/IBPC.S73246 252 views
10
Microbiome disruption and recovery in the fish Gambusia affinis following exposure to broad-spectrum antibiotic
Jeanette M Carlson;Annie B Leonard;Embriette R Hyde;Joseph F Petrosino;Todd P Primm;
2017 Infection and drug resistance DOI: 10.2147/IDR.S129055 222 views
11
Probiotics and blood pressure: current insights
Aditya Upadrasta;Ratna Sudha Madempudi;
2016 integrated blood pressure control DOI: 10.2147/IBPC.S73246 170 views
12
Discrepant gene functional potential and cross-feedings of anammox bacteria Ca. Jettenia caeni and Ca. Brocadia sinica in response to acetate.
Feng, Ying;Zhao, Yunpeng;Jiang, Bo;Zhao, Huazhang;Wang, Qilin;Liu, Sitong;
2019 Water research DOI: S0043-1354(19)30748-... 190 views
13
A review of next generation sequencing technologies used in the evaluation of the skin microbiome: what a time to be alive.
Sandhu, Simran S;Pourang, Aunna;Sivamani, Raja K;
2019 dermatology online journal DOI: 13030/qt3hv5z3q3 275 views
14
Metagenomic insights into the changes in microbial community and antimicrobial resistance genes associated with different salt content of red pepper (Capsicum annuum L.) sauce
Li, Z.
2020 food microbiology DOI: 10.1016/j.fm.2019.10... 311 views
15
Revegetation on abandoned salt ponds relieves the seasonal fluctuation of soil microbiomes
Tran, Huyen-Trang;Wang, Hao-Chu;Hsu, Tsai-Wen;Sarkar, Rakesh;Huang, Chao-Li;Chiang, Tzen-Yuh;
2019 BMC genomics 496 views
16
Metagenomic analysis reveals a rich bacterial content in high-risk prostate tumors from African men.
Feng, Ye;Jaratlerdsiri, Weerachai;Patrick, Sean M;Lyons, Ruth J;Haynes, Anne-Maree;Collins, Colin C;...
2019 the prostate DOI: 10.1002/pros.23897 187 views
17
Relative Performance of MinION (Oxford Nanopore Technologies) . Sequel (Pacific Biosciences) Third-Generation Sequencing Instruments in Identification of Agricultural and Forest Fungal Pathogens.
Loit, Kaire;Adamson, Kalev;Bahram, Mohammad;Puusepp, Rasmus;Anslan, Sten;Kiiker, Riinu;Drenkhan, Rei...
2019 Applied and environmental microbiology DOI: AEM.01368-19 264 views
18
Top-down Enrichment Guides in Formation of Synthetic Microbial Consortia for Biomass Degradation.
Gilmore, Sean P;Lankiewicz, Thomas S;Wilken, St Elmo;Brown, Jennifer L;Sexton, Jessica A;Henske, Joh...
2019 acs synthetic biology DOI: 10.1021/acssynbio.9b... 314 views
19
Harnessed viruses in the age of metagenomics and synthetic biology: an update on infectious clone assembly and biotechnologies of plant viruses
Pasin, F.
2019 plant biotechnology journal DOI: 10.1111/pbi.13084 325 views
20
Microbiota and Antibiotic Resistome of Lettuce Leaves and Radishes Grown in Soils Receiving Manure-Based Amendments Derived From Antibiotic-Treated Cows
Fogler, Kendall;Guron, Giselle K. P.;Guron, Giselle K. P.;Wind, Lauren L.;Keenum, Ishi M.;Hession, W...
2019 frontiers in sustainable food systems 277 views

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ISSN: 1553-734X 654 views
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Motif environment probabilistic model domain annotation functional annotation metatranscriptomic Machine learning Biomarker bootstrap community ecology stress resistance core microbiota stress-specific microbiota