de novo assembly

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1
improving transcriptome assembly through error correction of high-throughput sequence reads
;Matthew D. MacManes;Michael B. Eisen
2013 pediatrics DOI: 10.7717/peerj.113 171 views
2
quality control of next-generation sequencing data without a reference
;Urmi H Trivedi;Timothée eCézard;Stephen eBridgett;Anna eMontazam;Jenna eNichols;Mark eBlaxter;Mark...
2014 chemical record (new york, ny) DOI: 10.3389/fgene.2014.0... 211 views
3
transcriptome sequencing and expression analysis of cadmium (cd) transport and detoxification related genes in cd-accumulating salix integra
;Xiang Shi;Haijing Sun;Yitai Chen;Hongwei Pan;Shufeng Wang
2016 phytochemistry letters DOI: 10.3389/fpls.2016.01... 180 views
4
in silico functional networks identified in fish nucleated red blood cells by means of transcriptomic and proteomic profiling
;Sara Puente-Marin;Iván Nombela;Sergio Ciordia;María Carmen Mena;Verónica Chico;Julio Coll;María del...
2018 thermal science and engineering progress DOI: 10.3390/genes9040202 218 views
5
a de-novo-assembly-based data analysis pipeline for plant obligate parasite metatranscriptomic studies
;Li Guo;Kelly S Allen;Kelly S Allen;Greg A Deiulio;Greg A Deiulio;Yong Zhang;Yong Zhang;Angela M Mad...
2016 phytochemistry letters DOI: 10.3389/fpls.2016.00... 178 views
6
head transcriptomes of two closely related species of fruit flies of the anastrepha fraterculus group reveals divergent genes in species with extensive gene flow
;Victor Borges Rezende;Carlos Congrains;André Luís A. Lima;Emeline Boni Campanini;Aline Minali Nakam...
2016 separation and purification technology DOI: 10.1534/g3.116.03048... 184 views
7
characterization of global transcriptome using illumina paired-end sequencing and development of est-ssr markers in two species of gynostemma (cucurbitaceae)
;Yue-Mei Zhao;Tao Zhou;Zhong-Hu Li;Gui-Fang Zhao
2015 Journal of ethnopharmacology DOI: 10.3390/molecules201... 150 views
8
Characterization of small RNAs originating from mitoviruses infecting the conifer pathogen Fusarium circinatum.
Muñoz-Adalia, E J;Diez, J J;Fernández, M M;Hantula, J;Vainio, E J;
2018 archives of virology DOI: 10.1007/s00705-018-3... 210 views
9
Identification of heat-responsive genes in carnation (Dianthus caryophyllus L.) by RNA-seq
eWan, Xueli;eZhou, Qiao;eWang, Yuanyuan;eWang, Wenen;eBao, Manzhu;eZhang, Junwei;
2015 Frontiers in plant science 112 views
10
The distribution of novel bacterial laccases in alpine paleosols is directly related to soil stratigraphy.
Dandare, Shamsudeen U;Young, Jonathan M;Kelleher, Brian P;Allen, Christopher C R;
2019 The Science of the total environment DOI: S0048-9697(19)31242-... 160 views
11
The First Complete Chloroplast Genome Sequences in Actinidiaceae: Genome Structure and Comparative Analysis.
Yao, Xiaohong;Tang, Ping;Li, Zuozhou;Li, Dawei;Liu, Yifei;Huang, Hongwen;
2015 PloS one DOI: 10.1371/journal.pone... 219 views
12
Identification of IscU residues critical for de novo iron-sulfur cluster assembly.
Tanaka, Naoyuki;Yuda, Eiki;Fujishiro, Takashi;Hirabayashi, Kei;Wada, Kei;Takahashi, Yasuhiro;
2019 molecular microbiology DOI: 10.1111/mmi.14392 225 views
13
Transcriptome sequencing, de novo assembly, characterisation of wild accession of blackgram (Vigna mungo var. silvestris) as a rich resource for development of molecular markers and validation of SNPs by high resolution melting (HRM) analysis
Raizada, A.
2019 BMC plant biology DOI: 10.1186/s12870-019-1... 232 views
14
TAP: a targeted clinical genomics pipeline for detecting transcript variants using RNA-seq data
Chiu, Readman;Nip, Ka Ming;Chu, Justin;Birol, Inanc;
2018 bmc medical genomics 431 views
15
Draft genome sequence of a novel B. glycinifermentans strain JRCGR-1 having antifungal and antibacterial properties.
Karim, A;Poirot, O;Khatoon, A;Aurongzeb, M;
2019 Journal of global antimicrobial resistance DOI: S2213-7165(19)30265-... 368 views
16
Transcriptome sequencing and expression analysis of terpenoid biosynthesis genes in Litsea cubeba.
Han, Xiao-Jiao;Wang, Yang-Dong;Chen, Yi-Cun;Lin, Li-Yuan;Wu, Qing-Ke;
2013 PloS one 694 views
17
Metagenomics-Based, Strain-Level Analysis of Escherichia coli From a Time-Series of Microbiome Samples From a Crohn's Disease Patient
Fang, Xin;Monk, Jonathan M.;Nurk, Sergey;Akseshina, Margarita;Zhu, Qiyun;Gemmell, Christopher;Gianet...
2018 Frontiers in microbiology 177 views
18
High quality 3C de novo assembly and annotation of a multidrug resistant ST-111 Pseudomonas aeruginosa genome: Benchmark of hybrid and non-hybrid assemblers.
Molina-Mora, José Arturo;Campos-Sánchez, Rebeca;Rodríguez, César;Shi, Leming;García, Fernando;
2020 Scientific reports DOI: 10.1038/s41598-020-5... 246 views
19
De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis
Brian J Haas;Alexie Papanicolaou;Moran Yassour;Manfred Grabherr;Philip D Blood;Joshua Bowden;Matthew...
2013 nature protocols DOI: doi:10.1038/nprot.20... 230 views
20
Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing
Vera JC;Wheat CW;Fescemyer HW;Frilander MJ;Crawford DL;Hanski I;Marden JH;;
2008 molecular ecology 501 views

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Genome biology
ISSN: 1474-760X 457 views

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rnaseq illumina error correction quality control illumina sequencing pcr duplicatesgenetics transcription factors cd stress transcriptome proteome rna-seq functional network rainbow trout red blood cells metatranscriptomics host-pathogen interaction next generation sequencing