scrna-seq

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1
ascend: R package for analysis of single-cell RNA-seq data.
Senabouth, Anne;Lukowski, Samuel W;Hernandez, Jose Alquicira;Andersen, Stacey B;Mei, Xin;Nguyen, Qua...
2019 gigascience DOI: giz087 247 views
2
scReClassify: post hoc cell type classification of single-cell rNA-seq data.
Kim, Taiyun;Lo, Kitty;Geddes, Thomas A;Kim, Hani Jieun;Yang, Jean Yee Hwa;Yang, Pengyi;
2019 BMC genomics DOI: 10.1186/s12864-019-6... 139 views
3
Dynamically characterizing individual clinical change by the steady state of disease-associated pathway.
Sun, Shaoyan;Yu, Xiangtian;Sun, Fengnan;Tang, Ying;Zhao, Juan;Zeng, Tao;
2019 BMC Bioinformatics DOI: 10.1186/s12859-019-3... 151 views
4
A human breast atlas integrating single-cell proteomics and transcriptomics.
Gray, G Kenneth;Li, Carman Man-Chung;Rosenbluth, Jennifer M;Selfors, Laura M;Girnius, Nomeda;Lin, Ji...
2022 Developmental cell DOI: 10.1016/j.devcel.202... 55 views
5
Data denoising with transfer learning in single-cell transcriptomics.
Wang, Jingshu;Agarwal, Divyansh;Huang, Mo;Hu, Gang;Zhou, Zilu;Ye, Chengzhong;Zhang, Nancy R;
2019 Nature Methods DOI: 10.1038/s41592-019-0... 280 views
6
Single-cell RNA-seq reveals RAD51AP1 as a potent mediator of EGFRvIII in human glioblastomas.
Wang, Qixue;Tan, Yanli;Fang, Chuan;Zhou, Junhu;Wang, Yunfei;Zhao, Kai;Jin, Weili;Wu, Ye;Liu, Xiaomin...
2019 Aging DOI: 10.18632/aging.10228... 255 views
7
Activation of Hedgehog Signaling Promotes Development of Mouse and Human Enteric Neural Crest Cells, Based on single-cell Transcriptome Analyses.
Lau, Sin-Ting;Li, Zhixin;Lai, Frank Pui-Ling;Lui, Kathy Nga-Chu;Li, Peng;Munera, Jorge O;Pan, Guangj...
2019 gastroenterology DOI: S0016-5085(19)41233-... 236 views
8
Single-cell transcriptional profiling reveals the heterogenicity in colorectal cancer.
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2019 Medicine DOI: 10.1097/MD.000000000... 208 views
10
Evaluation of single-cell classifiers for single-cell RNA sequencing data sets.
Zhao, Xinlei;Wu, Shuang;Fang, Nan;Sun, Xiao;Fan, Jue;
2019 Briefings in bioinformatics DOI: bbz096 276 views
12
An Effective Biclustering-based Framework for Identifying Cell Subpopulations from scRNA-seq Data.
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2020 ieee/acm transactions on computational biology and... DOI: 10.1109/TCBB.2020.29... 139 views
13
Therapy-Induced Evolution of Human Lung Cancer Revealed by Single-Cell RNA Sequencing
Maynard A;McCoach CE;Rotow JK;Harris L;Haderk F;Kerr DL;Yu EA;Schenk EL;Tan W;Zee A;Tan M;Gui P;Lea...
2020 Cell 134 views
14
Ensemble learning models that predict surface protein abundance from single-cell multimodal omics data.
Xu, Fan;Wang, Shike;Dai, Xinnan;Mundra, Piyushkumar A;Zheng, Jie;
2020 methods (san diego, calif) DOI: S1046-2023(20)30215-... 249 views
15
Variance-adjusted Mahalanobis (VAM): A fast and accurate method for cell-specific gene set scoring
Frost, H.R.
2020 Nucleic Acids Research DOI: 10.1093/nar/gkaa582 55 views
16
The Comparative Pathology Workbench: Interactive visual analytics for biomedical data.
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2023 Journal of pathology informatics DOI: 100328 51 views
17
scCancer2: data-driven in-depth annotations of the tumor microenvironment at single-level resolution.
Chen, Zeyu;Miao, Yuxin;Tan, Zhiyuan;Hu, Qifan;Wu, Yanhong;Li, Xinqi;Guo, Wenbo;Gu, Jin;
2024 Bioinformatics DOI: btae028 44 views
18
TWIST1+FAP+ fibroblasts in the pathogenesis of intestinal fibrosis in Crohn's disease.
Zhang, Yao;Wang, Jiaxin;Sun, Hongxiang;Xun, Zhenzhen;He, Zirui;Zhao, Yizhou;Qi, Jingjing;Sun, Sishen...
2024 The Journal of clinical investigation DOI: e179472 20 views
19
Single-cell sequencing combined with bulk RNA seq reveals the roles of natural killer cell in prognosis and immunotherapy of hepatocellular carcinoma.
Wu, Jiahao; Yang, Fan; Huang, Guanqun
2025 Scientific reports DOI: 10.1038/s41598-025-9... 9 views
20
Thioredoxin: a key factor in cold tumor formation and a promising biomarker for immunotherapy resistance in NSCLC.
Hu, Jiayi; Abulimiti, Yilimunuer; Wang, Haiyang; Yang, Dianyu; Wang, Xu; Wang, Yang; Ji, Ping
2025 respiratory research DOI: 10.1186/s12931-025-0... 4 views
21
Unveiling the spatiotemporal strategies of plants in response to biotic and abiotic stresses:A comprehensive review.
Yu, Guo; Xiang, Jingyu; Lai, Caixing; Li, Xiaoming; Sunahara, Geoffrey I; Mo, Fujin; Zhang, Xuehong;...
2025 Plant physiology and biochemistry : PPB DOI: 10.1016/j.plaphy.202... 12 views

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single cell clustering data visualization normalization r package differential expression filtering single-cell rna-seq cell type classification class label noise Breast cancer aging brca1 brca2 organoids cytof mass cytometry cell state plasticity mammary biology multi-omic single-cell atlas multiplexed tissue staining