iMIRAGE: An R package to impute microRNA expression using protein-coding genes.

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ID: 71652
2019
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Abstract
MicroRNAs (miRNAs) are critical post-transcriptional regulators of gene expression. Due to challenges in accurate profiling of small RNAs, a vast majority of public transcriptome datasets lack reliable miRNA profiles. However, the biological consequence of miRNA activity in the form of altered protein-coding gene (PCG) expression can be captured using machine-learning algorithms. Here we present iMIRAGE (imputed miRNA activity from gene expression), a convenient tool to predict miRNA expression using PCG expression of the test datasets. The iMIRAGE package provides an integrated workflow for normalization and transformation of miRNA and PCG expression data, along with the option to utilize predicted miRNA targets to impute miRNA activity from independent test PCG datasets.The iMIRAGE package for R, along with package documentation and vignette, is available at https://aritronath.github.io/iMIRAGE/index.html.Supplementary data are available at Bioinformatics online.
Reference Key
nath2019imiragebioinformatics Use this key to autocite in the manuscript while using SciMatic Manuscript Manager or Thesis Manager
Authors Nath, Aritro;Chang, Jeremy;Huang, R Stephanie;
Journal Bioinformatics
Year 2019
DOI
btz939
URL
Keywords
multicriteria decision analysis anticancer therapy value assessment value assessment framework

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