Xenbase: a genomic, epigenomic and transcriptomic model organism database.

Clicks: 316
ID: 66121
2018
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Abstract
Xenbase (www.xenbase.org) is an online resource for researchers utilizing Xenopus laevis and Xenopus tropicalis, and for biomedical scientists seeking access to data generated with these model systems. Content is aggregated from a variety of external resources and also generated by in-house curation of scientific literature and bioinformatic analyses. Over the past two years many new types of content have been added along with new tools and functionalities to reflect the impact of high-throughput sequencing. These include new genomes for both supported species (each with chromosome scale assemblies), new genome annotations, genome segmentation, dynamic and interactive visualization for RNA-Seq data, updated ChIP-Seq mapping, GO terms, protein interaction data, ORFeome support, and improved connectivity to other biomedical and bioinformatic resources.
Reference Key
karimi2018xenbasenucleic Use this key to autocite in the manuscript while using SciMatic Manuscript Manager or Thesis Manager
Authors Karimi, Kamran;Fortriede, Joshua D;Lotay, Vaneet S;Burns, Kevin A;Wang, Dong Zhou;Fisher, Malcom E;Pells, Troy J;James-Zorn, Christina;Wang, Ying;Ponferrada, V G;Chu, Stanley;Chaturvedi, Praneet;Zorn, Aaron M;Vize, Peter D;
Journal Nucleic Acids Research
Year 2018
DOI
10.1093/nar/gkx936
URL
Keywords
xenopus anatomy ontology blast gbrowse gene expression analysis genome database polyploid genome textpresso

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