G3viz: an R package to interactively visualize genetic mutation data using a lollipop-diagram.

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ID: 41984
2019
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Abstract
The lollipop-diagram is one of the widely used graphical representations to visualize and explore translational effects of genetic mutations in cancer genomics. However, an easy-to-use lollipop-diagram tool with full functionality is still lacking. Here, we introduce g3viz, an R package that enables researchers to explore genetic mutation data using a lollipop-diagram in a web browser. With a few lines of R code, users can interactively visualize data details, annotate findings, and export resultant diagrams in high-quality figures. Because of usefulness and usability, g3viz can be generally exploited by researchers with different levels of bioinformatics skills and programming experience.The R package is freely available under the MIT license from CRAN (http://cran.r-project.org/web/packages/g3viz). The g3lollipop JavaScript package is freely available under MIT license at GitHub (https://github.com/g3viz/g3lollipop.js).Supplementary data are available at Bioinformatics online.
Reference Key
guo2019g3vizbioinformatics Use this key to autocite in the manuscript while using SciMatic Manuscript Manager or Thesis Manager
Authors Guo, Xin;Zhang, Bo;Zeng, Wenqi;Zhao, Shuting;Ge, Dongliang;
Journal Bioinformatics
Year 2019
DOI
btz631
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