PCIM-DTA: Pairwise Conditional Interaction Modeling for Drug–Target Affinity Prediction under Cold-Start Scenarios

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ID: 327134
2026
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Abstract
MOTIVATION: Cold-start drug-target affinity prediction remains challenging because static interaction mechanisms cannot adapt to individual drug-target pairs. RESULTS: We propose PCIM-DTA, which constructs pair-level interaction representations and derives a pair-specific condition vector from global drug and target features. The condition vector modulates attention, pair-token features, distribution-aware recalibration, and regression parameters, while graph message passing captures higher-order dependencies. Experiments on Davis and BindingDB-Kd show that PCIM-DTA achieves competitive or superior performance under Warm, Cold-drug, Cold-target, Cold-both, and Scaffold-drug settings. Ablation studies support the contribution of each component. AVAILABILITY AND IMPLEMENTATION: The datasets used in this study are publicly available, including the Davis and BindingDB-Kd datasets. The implementation code of PCIM-DTA is publicly available at https://github.com/1322469934/PCIM-DTA. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
Reference Key
openalex_W7204785900 Use this key to autocite in the manuscript while using SciMatic Manuscript Manager or Thesis Manager
Authors Z. Zhou, Min Chen, 周文剑, Qiong Xiao
Journal BMC Bioinformatics
Year 2026
DOI
10.1093/bioinformatics/btag646
URL
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