Gepard: a rapid and sensitive tool for creating dotplots on genome scale

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ID: 307610
2007
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Abstract
Gepard provides a user-friendly, interactive application for the quick creation of dotplots. It utilizes suffix arrays to reduce the time complexity of dotplot calculation to Theta(m*log n). A client-server mode, which is a novel feature for dotplot creation software, allows the user to calculate dotplots and color them by functional annotation without any prior downloading of sequence or annotation data.Both source codes and executable binaries are available at http://mips.gsf.de/services/analysis/gepard
Reference Key
openalex_W2165891191 Use this key to autocite in the manuscript while using SciMatic Manuscript Manager or Thesis Manager
Authors Jan Krumsiek, Roland Arnold, Thomas Rattei
Journal BMC Bioinformatics
Year 2007
DOI
10.1093/bioinformatics/btm039
URL
https://doi.org/10.1093/bioinformatics/btm039
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