miRcode: a map of putative microRNA target sites in the long non-coding transcriptome

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ID: 306394
2012
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Abstract
Abstract Summary: Although small non-coding RNAs, such as microRNAs, have well-established functions in the cell, long non-coding RNAs (lncRNAs) have only recently started to emerge as abundant regulators of cell physiology, and their functions may be diverse. A small number of studies describe interactions between small and lncRNAs, with lncRNAs acting either as inhibitory decoys or as regulatory targets of microRNAs, but such interactions are still poorly explored. To facilitate the study of microRNA–lncRNA interactions, we implemented miRcode: a comprehensive searchable map of putative microRNA target sites across the complete GENCODE annotated transcriptome, including 10 419 lncRNA genes in the current version. Availability: http://www.mircode.org Contact: erik.larsson@gu.se Supplementary Information: Supplementary data are available at Bioinformatics online.
Reference Key
openalex_W2123479813 Use this key to autocite in the manuscript while using SciMatic Manuscript Manager or Thesis Manager
Authors Ashwini Jeggari, Debora S. Marks, Erik Larsson
Journal BMC Bioinformatics
Year 2012
DOI
10.1093/bioinformatics/bts344
URL
https://doi.org/10.1093/bioinformatics/bts344
Keywords Keywords not found

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