Conformational analysis of nucleic acids revisited: Curves+

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ID: 305906
2009
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Abstract
We describe Curves+, a new nucleic acid conformational analysis program which is applicable to a wide range of nucleic acid structures, including those with up to four strands and with either canonical or modified bases and backbones. The program is algorithmically simpler and computationally much faster than the earlier Curves approach, although it still provides both helical and backbone parameters, including a curvilinear axis and parameters relating the position of the bases to this axis. It additionally provides a full analysis of groove widths and depths. Curves+ can also be used to analyse molecular dynamics trajectories. With the help of the accompanying program Canal, it is possible to produce a variety of graphical output including parameter variations along a given structure and time series or histograms of parameter variations during dynamics.
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openalex_W2032183039 Use this key to autocite in the manuscript while using SciMatic Manuscript Manager or Thesis Manager
Authors Richard Lavery, Maher Moakher, John H. Maddocks, Daiva Petkevičiūtė-Gerlach, K. Zakrzewska
Journal Nucleic Acids Research
Year 2009
DOI
10.1093/nar/gkp608
URL
https://academic.oup.com/nar/article-pdf/37/17/5917/16755280/gkp608.pdf
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