VADAR: a web server for quantitative evaluation of protein structure quality

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ID: 301451
2003
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Abstract
VADAR (Volume Area Dihedral Angle Reporter) is a comprehensive web server for quantitative protein structure evaluation. It accepts Protein Data Bank (PDB) formatted files or PDB accession numbers as input and calculates, identifies, graphs, reports and/or evaluates a large number (>30) of key structural parameters both for individual residues and for the entire protein. These include excluded volume, accessible surface area, backbone and side chain dihedral angles, secondary structure, hydrogen bonding partners, hydrogen bond energies, steric quality, solvation free energy as well as local and overall fold quality. These derived parameters can be used to rapidly identify both general and residue-specific problems within newly determined protein structures. The VADAR web server is freely accessible at http://redpoll.pharmacy.ualberta.ca/vadar.
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openalex_W1965151258 Use this key to autocite in the manuscript while using SciMatic Manuscript Manager or Thesis Manager
Authors Leigh Willard
Journal Nucleic Acids Research
Year 2003
DOI
10.1093/nar/gkg565
URL
https://academic.oup.com/nar/article-pdf/31/13/3316/9487364/gkg565.pdf
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