RDP2: recombination detection and analysis from sequence alignments

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ID: 299354
2004
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Abstract
Abstract Summary: RDP2 is a Windows 95/XP program that examines nucleotide sequence alignments and attempts to identify recombinant sequences and recombination breakpoints using 10 published recombination detection methods, including GENECONV, BOOTSCAN, MAXIMUM χ2, CHIMAERA and SISTER SCANNING. The program enables fast automated analysis of large alignments (up to 300 sequences containing 13 000 sites), and interactive exploration, management and verification of results with different recombination detection and tree drawing methods. Availability: RDP2 is available free from the RDP2 website (http://darwin.uvigo.es/rdp/rdp.html) Contact: darren@science.uct.ac.za Supplementary information: Detailed descriptions of RDP2 and the methods it implements are included in the program manual, which can be downloaded from the RDP2 website.
Reference Key
openalex_W2143334889 Use this key to autocite in the manuscript while using SciMatic Manuscript Manager or Thesis Manager
Authors Darren P. Martin, Carolyn Williamson, David Posada
Journal BMC Bioinformatics
Year 2004
DOI
10.1093/bioinformatics/bth490
URL
https://doi.org/10.1093/bioinformatics/bth490
Keywords Keywords not found

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