ModBase, a database of annotated comparative protein structure models, and associated resources

Clicks: 3
ID: 297649
2010
Free PDF
Article Quality & Performance Metrics
Overall Quality
Not rated
Combines reader engagement with the AI quality analysis. This article has not been analysed, so there is no overall score — reader engagement is measured and shown alongside.
AI Quality Assessment
Not analyzed
Readership in this journal
Steady

Ranked #931 of 1,217 articles by views in Nucleic Acids Research

Most read Least read

Bar heights use a square-root scale. Only the 120 most-read articles are drawn; the journal has 1,217 in total.

Mint this article as an NFT
Not yet minted

Create a permanent, verifiable on-chain record of this article on the Scimatic Network. The NFT is held in your Journament account, and you can withdraw it to your own wallet at any time.

5 SUSD one-off · no wallet required
Sign in to mint
Abstract
ModBase (http://salilab.org/modbase) is a database of annotated comparative protein structure models. The models are calculated by ModPipe, an automated modeling pipeline that relies primarily on Modeller for fold assignment, sequence-structure alignment, model building and model assessment (http://salilab.org/modeller/). ModBase currently contains 10,355,444 reliable models for domains in 2,421,920 unique protein sequences. ModBase allows users to update comparative models on demand, and request modeling of additional sequences through an interface to the ModWeb modeling server (http://salilab.org/modweb). ModBase models are available through the ModBase interface as well as the Protein Model Portal (http://www.proteinmodelportal.org/). Recently developed associated resources include the SALIGN server for multiple sequence and structure alignment (http://salilab.org/salign), the ModEval server for predicting the accuracy of protein structure models (http://salilab.org/modeval), the PCSS server for predicting which peptides bind to a given protein (http://salilab.org/pcss) and the FoXS server for calculating and fitting Small Angle X-ray Scattering profiles (http://salilab.org/foxs).
Reference Key
openalex_W2131736388 Use this key to autocite in the manuscript while using SciMatic Manuscript Manager or Thesis Manager
Authors Ursula Pieper, Benjamin Webb, David T. Barkan, Dina Schneidman‐Duhovny, Avner Schlessinger, Hannes Braberg, Yang Zhao, Elvin Meng, Eric F. Pettersen, C.C. Huang, Ruchira S. Datta, P. Sampathkumar, M. S. Madhusudhan, Kimmen Sjölander, Thomas E. Ferrin, S.K. Burley, Andrej Šali
Journal Nucleic Acids Research
Year 2010
DOI
10.1093/nar/gkq1091
URL
https://academic.oup.com/nar/article-pdf/39/suppl_1/D465/7628375/gkq1091.pdf
Keywords Keywords not found

Citations

No citations found. To add a citation, contact the admin at info@scimatic.org

Comments

No comments yet. Be the first to comment on this article.