CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins

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ID: 294980
2018
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Abstract
CRISPR (clustered regularly interspaced short palindromic repeats) arrays and their associated (Cas) proteins confer bacteria and archaea adaptive immunity against exogenous mobile genetic elements, such as phages or plasmids. CRISPRCasFinder allows the identification of both CRISPR arrays and Cas proteins. The program includes: (i) an improved CRISPR array detection tool facilitating expert validation based on a rating system, (ii) prediction of CRISPR orientation and (iii) a Cas protein detection and typing tool updated to match the latest classification scheme of these systems. CRISPRCasFinder can either be used online or as a standalone tool compatible with Linux operating system. All third-party software packages employed by the program are freely available. CRISPRCasFinder is available at https://crisprcas.i2bc.paris-saclay.fr.
Reference Key
openalex_W2803245377 Use this key to autocite in the manuscript while using SciMatic Manuscript Manager or Thesis Manager
Authors David Couvin, Aude Bernheim, Claire Toffano‐Nioche, Marie Touchon, Juraj Michálik, Bertrand Néron, Eduardo P. C. Rocha, Gilles Vergnaud, Daniel Gautheret, Christine Pourcel
Journal Nucleic Acids Research
Year 2018
DOI
10.1093/nar/gky425
URL
https://academic.oup.com/nar/article-pdf/46/W1/W246/25110298/gky425.pdf
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