A series of PDB related databases for everyday needs

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ID: 294947
2010
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Abstract
The Protein Data Bank (PDB) is the world-wide repository of macromolecular structure information. We present a series of databases that run parallel to the PDB. Each database holds one entry, if possible, for each PDB entry. DSSP holds the secondary structure of the proteins. PDBREPORT holds reports on the structure quality and lists errors. HSSP holds a multiple sequence alignment for all proteins. The PDBFINDER holds easy to parse summaries of the PDB file content, augmented with essentials from the other systems. PDB_REDO holds re-refined, and often improved, copies of all structures solved by X-ray. WHY_NOT summarizes why certain files could not be produced. All these systems are updated weekly. The data sets can be used for the analysis of properties of protein structures in areas ranging from structural genomics, to cancer biology and protein design.
Reference Key
openalex_W2126103104 Use this key to autocite in the manuscript while using SciMatic Manuscript Manager or Thesis Manager
Authors Robbie P. Joosten, Tim A. H. te Beek, Elmar Krieger, Maarten L. Hekkelman, Rob Hooft, Reinhard Schneider, Christian Sander, Gert Vriend
Journal Nucleic Acids Research
Year 2010
DOI
10.1093/nar/gkq1105
URL
https://academic.oup.com/nar/article-pdf/39/suppl_1/D411/7629557/gkq1105.pdf
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