PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating

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ID: 294907
2009
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Abstract
Abstract Motivation: A variety of probabilistic models describing the evolution of DNA or protein sequences have been proposed for phylogenetic reconstruction or for molecular dating. However, there still lacks a common implementation allowing one to freely combine these independent features, so as to test their ability to jointly improve phylogenetic and dating accuracy. Results: We propose a software package, PhyloBayes 3, which can be used for conducting Bayesian phylogenetic reconstruction and molecular dating analyses, using a large variety of amino acid replacement and nucleotide substitution models, including empirical mixtures or non-parametric models, as well as alternative clock relaxation processes. Availability: PhyloBayes is freely available from our web site http://www.phylobayes.org. It works under Linux, Mac OsX and Windows operating systems. Contact: nicolas.lartillot@umontreal.ca Supplementary information: Supplementary data are available at Bioinformatics online.
Reference Key
openalex_W2104398544 Use this key to autocite in the manuscript while using SciMatic Manuscript Manager or Thesis Manager
Authors Nicolas Lartillot, Thomas Lepage, Samuel Blanquart
Journal BMC Bioinformatics
Year 2009
DOI
10.1093/bioinformatics/btp368
URL
https://academic.oup.com/bioinformatics/article-pdf/25/17/2286/48994556/bioinformatics_25_17_2286.pdf
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