YaHS: yet another Hi-C scaffolding tool

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ID: 291811
2022
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Abstract
Abstract Summary We present YaHS, a user-friendly command-line tool for the construction of chromosome-scale scaffolds from Hi-C data. It can be run with a single-line command, requires minimal input from users (an assembly file and an alignment file) which is compatible with similar tools and provides assembly results in multiple formats, thereby enabling rapid, robust and scalable construction of high-quality genome assemblies with high accuracy and contiguity. Availability and implementation YaHS is implemented in C and licensed under the MIT License. The source code, documentation and tutorial are available at https://github.com/sanger-tol/yahs. Supplementary information Supplementary data are available at Bioinformatics online.
Reference Key
openalex_W4311663808 Use this key to autocite in the manuscript while using SciMatic Manuscript Manager or Thesis Manager
Authors Chenxi Zhou, Shane McCarthy, Richard Durbin
Journal BMC Bioinformatics
Year 2022
DOI
10.1093/bioinformatics/btac808
URL
https://academic.oup.com/bioinformatics/article-pdf/39/1/btac808/48763581/btac808.pdf
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