CD-Search: protein domain annotations on the fly

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ID: 290923
2004
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Abstract
We describe the Conserved Domain Search service (CD-Search), a web-based tool for the detection of structural and functional domains in protein sequences. CD-Search uses BLAST® heuristics to provide a fast, interactive service, and searches a comprehensive collection of domain models. Search results are displayed as domain architecture cartoons and pairwise alignments between the query and domain-model consensus sequences. Search results may be visualized in further detail by embedding the query sequence into multiple alignment displays and by mapping onto three-dimensional molecular graphic displays of known structures within the domain family. CD-Search can be accessed at http://www.ncbi.nlm.nih.gov/Structure/cdd/wrpsb.cgi.
Reference Key
openalex_W2004589024 Use this key to autocite in the manuscript while using SciMatic Manuscript Manager or Thesis Manager
Authors Aron Marchler‐Bauer, Stephen H. Bryant
Journal Nucleic Acids Research
Year 2004
DOI
10.1093/nar/gkh454
URL
https://academic.oup.com/nar/article-pdf/32/suppl_2/W327/6211102/gkh454.pdf
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