CONSEL: for assessing the confidence of phylogenetic tree selection

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ID: 290856
2001
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Abstract
Abstract Summary: CONSEL is a program to assess the confidence of the tree selection by giving the p-values for the trees. The main thrust of the program is to calculate the p-value of the Approximately Unbiased (AU) test using the multi-scale bootstrap technique. This p-value is less biased than the other conventional p-values such as the Bootstrap Probability (BP), the Kishino–Hasegawa (KH) test, the Shimodaira–Hasegawa (SH) test, and the Weighted Shimodaira–Hasegawa (WSH) test. CONSEL calculates all these p-values from the output of the phylogeny program packages such as Molphy, PAML, and PAUP*. Furthermore, CONSEL is applicable to a wide class of problems where the BPs are available. Availability: The programs are written in C language. The source code for Unix and the executable binary for DOS are found at http://www.ism.ac.jp/~shimo/ Contact: shimo@ism.ac.jp
Reference Key
openalex_W2119900532 Use this key to autocite in the manuscript while using SciMatic Manuscript Manager or Thesis Manager
Authors Hidetoshi Shimodaira, Masami Hasegawa
Journal BMC Bioinformatics
Year 2001
DOI
10.1093/bioinformatics/17.12.1246
URL
https://academic.oup.com/bioinformatics/article-pdf/17/12/1246/48836831/bioinformatics_17_12_1246.pdf
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