SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny

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ID: 290629
1996
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Abstract
SEA VIEW and PHYLO_WIN are two graphic tools for X Windows-Unix computers dedicated to sequence alignment and molecular phylogenetics. SEA VIEW is a sequence alignment editor allowing manual or automatic alignment through an interface with CLUSTALW program. Alignment of large sequences with extensive length differences is made easier by a dot-plot-based routine. The PHYLO_WIN program allows phylogenetic tree building according to most usual methods (neighbor joining with numerous distance estimates, maximum parsimony, maximum likelihood), and a bootstrap analysis with any of them. Reconstructed trees can be drawn, edited, printed, stored, evaluated according to numerous criteria. Taxonomic species groups and sets of conserved regions can be defined by mouse and stored into sequence files, thus avoiding multiple data files. Both tools are entirely mouse driven. On-line help makes them easy to use. They are freely available by anonymous ftp at biom3.univ-lyonl. fr/pub/ mol_phylogeny or http://acnuc.univ-lyonl.fr, or by e-mail to galtier@biomserv.univ-lyonl.fr.
Reference Key
openalex_W2149160071 Use this key to autocite in the manuscript while using SciMatic Manuscript Manager or Thesis Manager
Authors Nicolas Galtier, Manolo Gouy, Christian Gautier
Journal BMC Bioinformatics
Year 1996
DOI
10.1093/bioinformatics/12.6.543
URL
https://doi.org/10.1093/bioinformatics/12.6.543
Keywords Keywords not found

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