PubChem 2023 update

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ID: 290608
2022
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Ranked #351 of 1,305 articles by views in Nucleic Acids Research

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Abstract
Abstract PubChem (https://pubchem.ncbi.nlm.nih.gov) is a popular chemical information resource that serves a wide range of use cases. In the past two years, a number of changes were made to PubChem. Data from more than 120 data sources was added to PubChem. Some major highlights include: the integration of Google Patents data into PubChem, which greatly expanded the coverage of the PubChem Patent data collection; the creation of the Cell Line and Taxonomy data collections, which provide quick and easy access to chemical information for a given cell line and taxon, respectively; and the update of the bioassay data model. In addition, new functionalities were added to the PubChem programmatic access protocols, PUG-REST and PUG-View, including support for target-centric data download for a given protein, gene, pathway, cell line, and taxon and the addition of the ‘standardize’ option to PUG-REST, which returns the standardized form of an input chemical structure. A significant update was also made to PubChemRDF. The present paper provides an overview of these changes.
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Authors Sunghwan Kim, Jie Chen, Tiejun Cheng, Asta Gindulytė, Jia He, Siqian He, Qingliang Li, Benjamin A. Shoemaker, Paul Thiessen, Bo Yu, Leonid Zaslavsky, Jian Zhang, Evan Bolton
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Journal Nucleic Acids Research
Year 2022
DOI
10.1093/nar/gkac956
URL
https://academic.oup.com/nar/article-pdf/51/D1/D1373/48441598/gkac956.pdf
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