phangorn: phylogenetic analysis in R

Clicks: 2
ID: 289843
2010
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Abstract
Abstract Summary: phangorn is a package for phylogenetic reconstruction and analysis in the R language. Previously it was only possible to estimate phylogenetic trees with distance methods in R. phangorn, now offers the possibility of reconstructing phylogenies with distance based methods, maximum parsimony or maximum likelihood (ML) and performing Hadamard conjugation. Extending the general ML framework, this package provides the possibility of estimating mixture and partition models. Furthermore, phangorn offers several functions for comparing trees, phylogenetic models or splits, simulating character data and performing congruence analyses. Availability: phangorn can be obtained through the CRAN homepage http://cran.r-project.org/web/packages/phangorn/index.html. phangorn is licensed under GPL 2. Contact: klaus.kschliep@snv.jussieu.fr Supplementary information: Supplementary data are available at Bioinformatics online.
Reference Key
openalex_W2117801354 Use this key to autocite in the manuscript while using SciMatic Manuscript Manager or Thesis Manager
Authors Klaus Schliep
Journal BMC Bioinformatics
Year 2010
DOI
10.1093/bioinformatics/btq706
URL
https://academic.oup.com/bioinformatics/article-pdf/27/4/592/48867594/bioinformatics_27_4_592.pdf
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