Summaries of Affymetrix GeneChip probe level data

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ID: 289517
2003
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Abstract
High density oligonucleotide array technology is widely used in many areas of biomedical research for quantitative and highly parallel measurements of gene expression. Affymetrix GeneChip arrays are the most popular. In this technology each gene is typically represented by a set of 11–20 pairs of probes. In order to obtain expression measures it is necessary to summarize the probe level data. Using two extensive spike‐in studies and a dilution study, we developed a set of tools for assessing the effectiveness of expression measures. We found that the performance of the current version of the default expression measure provided by Affymetrix Microarray Suite can be significantly improved by the use of probe level summaries derived from empirically motivated statistical models. In particular, improvements in the ability to detect differentially expressed genes are demonstrated.
Reference Key
openalex_W2109972881 Use this key to autocite in the manuscript while using SciMatic Manuscript Manager or Thesis Manager
Authors Rafael A. Irizarry, Benjamin M. Bolstad, François Collin, Leslie Cope, Bridget G. Hobbs, Terence P. Speed
Journal Nucleic Acids Research
Year 2003
DOI
10.1093/nar/gng015
URL
https://academic.oup.com/nar/article-pdf/31/4/e15/7038596/gng015.pdf
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