MultiQC: summarize analysis results for multiple tools and samples in a single report

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ID: 289290
2016
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Abstract
Fast and accurate quality control is essential for studies involving next-generation sequencing data. Whilst numerous tools exist to quantify QC metrics, there is no common approach to flexibly integrate these across tools and large sample sets. Assessing analysis results across an entire project can be time consuming and error prone; batch effects and outlier samples can easily be missed in the early stages of analysis.We present MultiQC, a tool to create a single report visualising output from multiple tools across many samples, enabling global trends and biases to be quickly identified. MultiQC can plot data from many common bioinformatics tools and is built to allow easy extension and customization.MultiQC is available with an GNU GPLv3 license on GitHub, the Python Package Index and Bioconda. Documentation and example reports are available at http://multiqc.infophil.ewels@scilifelab.se.
Reference Key
openalex_W2432815617 Use this key to autocite in the manuscript while using SciMatic Manuscript Manager or Thesis Manager
Authors Philip Ewels, Måns Magnusson, Sverker Lundin, Max Käller
Journal BMC Bioinformatics
Year 2016
DOI
10.1093/bioinformatics/btw354
URL
https://academic.oup.com/bioinformatics/article-pdf/32/19/3047/25072524/btw354.pdf
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