Bayesian Phylogenetics with BEAUti and the BEAST 1.7

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ID: 289217
2012
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Abstract
Computational evolutionary biology, statistical phylogenetics and coalescent-based population genetics are becoming increasingly central to the analysis and understanding of molecular sequence data. We present the Bayesian Evolutionary Analysis by Sampling Trees (BEAST) software package version 1.7, which implements a family of Markov chain Monte Carlo (MCMC) algorithms for Bayesian phylogenetic inference, divergence time dating, coalescent analysis, phylogeography and related molecular evolutionary analyses. This package includes an enhanced graphical user interface program called Bayesian Evolutionary Analysis Utility (BEAUti) that enables access to advanced models for molecular sequence and phenotypic trait evolution that were previously available to developers only. The package also provides new tools for visualizing and summarizing multispecies coalescent and phylogeographic analyses. BEAUti and BEAST 1.7 are open source under the GNU lesser general public license and available at http://beast-mcmc.googlecode.com and http://beast.bio.ed.ac.uk
Reference Key
openalex_W2130362098 Use this key to autocite in the manuscript while using SciMatic Manuscript Manager or Thesis Manager
Authors Alexei J. Drummond, Marc A. Suchard, Dong Xie, Andrew Rambaut
Journal molecular biology and evolution
Year 2012
DOI
10.1093/molbev/mss075
URL
https://academic.oup.com/mbe/article-pdf/29/8/1969/13648091/mss075.pdf
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