jModelTest: Phylogenetic Model Averaging

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ID: 289206
2008
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Abstract
jModelTest is a new program for the statistical selection of models of nucleotide substitution based on "Phyml" (Guindon and Gascuel 2003. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol. 52:696–704.). It implements 5 different selection strategies, including "hierarchical and dynamical likelihood ratio tests," the "Akaike information criterion," the "Bayesian information criterion," and a "decision-theoretic performance-based" approach. This program also calculates the relative importance and model-averaged estimates of substitution parameters, including a model-averaged estimate of the phylogeny. jModelTest is written in Java and runs under Mac OSX, Windows, and Unix systems with a Java Runtime Environment installed. The program, including documentation, can be freely downloaded from the software section at http://darwin.uvigo.es.
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openalex_W2120611093 Use this key to autocite in the manuscript while using SciMatic Manuscript Manager or Thesis Manager
Authors David Posada
Journal molecular biology and evolution
Year 2008
DOI
10.1093/molbev/msn083
URL
https://academic.oup.com/mbe/article-pdf/25/7/1253/3543852/msn083.pdf
Keywords Keywords not found

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