visualizing data mining results with the brede tools

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ID: 251142
2009
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Abstract
A few neuroinformatics databases now exist that record results from neuroimaging studies in the form of brain coordinates in stereotaxic space. The Brede Toolbox was originally developed to extract, analyze and visualize data from one of them --- the BrainMap database. Since then the Brede Toolbox has expanded and now includes its own database with coordinates along with ontologies for brain regions and functions: The Brede Database. With Brede Toolbox and Database combined we setup automated workflows for extraction of data, mass meta-analytic data mining and visualizations. Most of the Web presence of the Brede Database is established by a single script executing a workflow involving these steps together with a final generation of Web pages with embedded visualizations and links to interactive three-dimensional models in the Virtual Reality Modeling Language. Apart from the Brede tools I briefly review alternate visualization tools and methods for Internet-based visualization and information visualization as well as portals for visualization tools.
Reference Key
nielsen2009frontiersvisualizing Use this key to autocite in the manuscript while using SciMatic Manuscript Manager or Thesis Manager
Authors ;Finn A Nielsen;Finn A Nielsen;Finn A Nielsen
Journal Nucleic Acids Research
Year 2009
DOI
10.3389/neuro.11.026.2009
URL
http://journal.frontiersin.org/Journal/10.3389/neuro.11.026.2009/full
Keywords
meta-analysis neuroimaging text mining visualization database neuropsychiatry biological psychiatry bredeneurosciences

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