using the subcellular database for arabidopsis proteins to localize the deg protease family

Clicks: 278
ID: 235885
2014
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Abstract
Sub-functionalization during the expansion of gene families in eukaryotes has occurred in part through specific subcellular localization of different family members. To better understand this process in plants, compiled records of large-scale proteomic and fluorescent protein localization datasets can be explored and bioinformatic predictions for protein localization can be used to predict the gaps in experimental data. This process can be followed by targeted experiments to test predictions. The SUBA3 database is a free web-service at http://suba.plantenergy.uwa.edu.au that helps users to explore reported experimental data and predictions concerning proteins encoded by gene families and to define the experiments required to locate these homologous sets of proteins. Here we show how SUBA3 can be used to explore the subcellular location of the Deg protease family of ATP-independent serine endopeptidases (Deg1-Deg16). Combined data integration and new experiments refined location information for Deg1 and Deg9, confirmed Deg2, Deg5, and Deg8 in plastids and Deg 15 in peroxisomes and provide substantial experimental evidence for mitochondrial localized Deg proteases. Two of these, Deg3 and Deg10, additionally localized to the plastid, revealing novel dual-targeted Deg proteases in the plastid and the mitochondrion. SUBA3 is continually updated to ensure that researchers can use the latest published data when planning the experimental steps remaining to localize gene family functions.
Reference Key
tanz2014frontiersusing Use this key to autocite in the manuscript while using SciMatic Manuscript Manager or Thesis Manager
Authors ;Sandra Karin Tanz;Ian eCastleden;Cornelia M Hooper;Ian eSmall;Ian eSmall;A. Harvey eMillar;A. Harvey eMillar;A. Harvey eMillar
Journal phytochemistry letters
Year 2014
DOI
10.3389/fpls.2014.00396
URL
http://journal.frontiersin.org/Journal/10.3389/fpls.2014.00396/full
Keywords
protein subcellular localization database arabidopsis

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