Proteomic dataset: Profiling of membrane fraction of isolated from Crohn's disease patients after adhesion and invasion experiments.

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ID: 79841
2019
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Abstract
Crohn's disease (CD) is a type of inflammatory bowel disease (IDB). The endoscopic picture of Crohn's disease includes thickened submucosa, transmural inflammation, fissuring ulceration, and non-caseating granulomas. Intestinal microbiome dysbiosis has been described systematically in patients with IBD. In recent decades it was detailed that , especially adherent-invasive (AIEC) pathotype, has been implicated in the pathogenesis of IBD, including Crohn's disease (Palmela, et al., 2018). In comparison with commensal strains of , AIEC strains have a large adhesive-invasive potential therefore its surface composition is of great interest. We presented a dataset of the membrane proteins of strains isolated from patients with Crohn's disease. From the set of isolated from Crohn's disease patients [2] we chose three isolates with strongest AIEC pathotype. We performed proteome-wide LC-MS analysis of membrane fraction of this isolates after invasion or adhesion-invasion to human intestinal CaCo-2 cell line and prior to this (control). The data including LC-MS/MS raw files and exported MaxQuant search results with fasta files were deposited to the PRIDE repository project accession PXD014250.
Reference Key
bukato2019proteomicdata Use this key to autocite in the manuscript while using SciMatic Manuscript Manager or Thesis Manager
Authors Bukato, Olga;Pobeguts, Olga;Rakitina, Daria;Baikova, Julia;Butenko, Ivan;Silantyev, Artemy;Fisunov, Gleb;Govorun, Vadim;
Journal Data in brief
Year 2019
DOI
10.1016/j.dib.2019.104417
URL
Keywords
Escherichia coli membrane proteins lc-ms/ms proteome crohn's disease aiec

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