The future of metabolomics in ELIXIR.

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ID: 51771
2017
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Abstract
Metabolomics, the youngest of the major omics technologies, is supported by an active community of researchers and infrastructure developers across Europe. To coordinate and focus efforts around infrastructure building for metabolomics within Europe, a workshop on the "Future of metabolomics in ELIXIR" was organised at Frankfurt Airport in Germany. This one-day strategic workshop involved representatives of ELIXIR Nodes, members of the PhenoMeNal consortium developing an e-infrastructure that supports workflow-based metabolomics analysis pipelines, and experts from the international metabolomics community. The workshop established as the critical area, where a maximal impact of computational metabolomics and data management on other fields could be achieved. In particular, the existing four ELIXIR Use Cases, where the metabolomics community - both industry and academia - would benefit most, and which could be exhaustively mapped onto the current five ELIXIR Platforms were discussed. This opinion article is a call for support for a new ELIXIR metabolomics Use Case, which aligns with and complements the existing and planned ELIXIR Platforms and Use Cases.
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van-rijswijk2017thef1000research Use this key to autocite in the manuscript while using SciMatic Manuscript Manager or Thesis Manager
Authors van Rijswijk, Merlijn;Beirnaert, Charlie;Caron, Christophe;Cascante, Marta;Dominguez, Victoria;Dunn, Warwick B;Ebbels, Timothy M D;Giacomoni, Franck;Gonzalez-Beltran, Alejandra;Hankemeier, Thomas;Haug, Kenneth;Izquierdo-Garcia, Jose L;Jimenez, Rafael C;Jourdan, Fabien;Kale, Namrata;Klapa, Maria I;Kohlbacher, Oliver;Koort, Kairi;Kultima, Kim;Le Corguillé, Gildas;Moreno, Pablo;Moschonas, Nicholas K;Neumann, Steffen;O'Donovan, Claire;Reczko, Martin;Rocca-Serra, Philippe;Rosato, Antonio;Salek, Reza M;Sansone, Susanna-Assunta;Satagopam, Venkata;Schober, Daniel;Shimmo, Ruth;Spicer, Rachel A;Spjuth, Ola;Thévenot, Etienne A;Viant, Mark R;Weber, Ralf J M;Willighagen, Egon L;Zanetti, Gianluigi;Steinbeck, Christoph;
Journal F1000Research
Year 2017
DOI
ELIXIR-1649
URL
Keywords
training databases metabolomics cloud computing bioinformatics infrastructure computational workflows data standards multi-omics approaches

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