Quantifying the Onset and Progression of Plant Senescence by Color Image Analysis for High Throughput Applications.

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ID: 41450
2016
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Abstract
Leaf senescence, an indicator of plant age and ill health, is an important phenotypic trait for the assessment of a plant's response to stress. Manual inspection of senescence, however, is time consuming, inaccurate and subjective. In this paper we propose an objective evaluation of plant senescence by color image analysis for use in a high throughput plant phenotyping pipeline. As high throughput phenotyping platforms are designed to capture whole-of-plant features, camera lenses and camera settings are inappropriate for the capture of fine detail. Specifically, plant colors in images may not represent true plant colors, leading to errors in senescence estimation. Our algorithm features a color distortion correction and image restoration step prior to a senescence analysis. We apply our algorithm to two time series of images of wheat and chickpea plants to quantify the onset and progression of senescence. We compare our results with senescence scores resulting from manual inspection. We demonstrate that our procedure is able to process images in an automated way for an accurate estimation of plant senescence even from color distorted and blurred images obtained under high throughput conditions.
Reference Key
cai2016quantifyingplos Use this key to autocite in the manuscript while using SciMatic Manuscript Manager or Thesis Manager
Authors Cai, Jinhai;Okamoto, Mamoru;Atieno, Judith;Sutton, Tim;Li, Yongle;Miklavcic, Stanley J;
Journal PloS one
Year 2016
DOI
10.1371/journal.pone.0157102
URL
Keywords Keywords not found

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