pared : Model selection using multi-objective optimization

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ID: 325448
2026
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Abstract
Abstract Motivation Model selection is a ubiquitous challenge in statistics. For penalized models, model selection typically entails tuning hyperparameters to maximize a measure of fit or minimize out-of-sample prediction error. However, these criteria fail to reflect other desirable characteristics, such as model sparsity, interpretability, or smoothness. Results We present the R package pared for Pareto-based model selection using multi-objective optimization. The package provides a generic interface, pared_optimize(), that allows users to define model-specific tuning parameters, objective functions, and objective directions. Built-in wrappers are also provided for the elastic net, fused lasso, fused graphical lasso, and group graphical lasso. Gaussian process-based multi-objective optimization is used to approximate the Pareto front, and interactive graphics allow users to inspect trade-offs among fit, sparsity, smoothness, structural similarity, and other user-defined criteria. Availability The pared R package and vignettes are available at https://github.com/priyamdas2/pared. The archived release corresponding to this manuscript is available on Zenodo with DOI: 10.5281/zenodo.20533535. Supplementary information Supplementary material is available at Bioinformatics Advances journal website.
Reference Key
openalex_W7203736126 Use this key to autocite in the manuscript while using SciMatic Manuscript Manager or Thesis Manager
Authors Priyam Das, Sarah Robinson, Christine B. Peterson
Journal Bioinformatics advances
Year 2026
DOI
10.1093/bioadv/vbag211
URL
Keywords Keywords not found

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