Quantifying niche breadth across environmental gradients using EcoNiche

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ID: 322444
2026
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Abstract
Abstract Characterizing niche breadth across continuous gradients poses a significant analytical bottleneck, as the inherent collinearity among environmental drivers complicates disentangling individual niche dimensions. Here, we present EcoNiche, an open-source R package that provides a standardized and reproducible workflow for estimating taxon niche position and niche breadth under continuous, multidimensional gradients. EcoNiche integrates constrained ordination for gradient-explicit niche estimation, community-level aggregation of niche metrics, generalized additive models for one-dimensional response analysis, and comparisons with Levins’ breadth within a unified analytical framework. Using large-scale Chinese forest microbial and plant community datasets, we demonstrate that EcoNiche recovers environmentally interpretable niche structure across taxa and data types. In microbial communities, EcoNiche quantified niche breadth after accounting for a focal temperature gradient and revealed consistent temperature-related niche positioning across ordination- and GAM-based analyses. In the plant community, a nonlinear variation in niche breadth was detected along temperature gradients, yielding clearer gradient signals after aggregation to the community level. Compared with sample-based Levins’ breadth, EcoNiche-derived niche breadth was more closely aligned with continuous environmental occupancy and less sensitive to species commonness effects. Together, these results show EcoNiche as a practical and ecologically interpretable framework for gradient-explicit niche analysis in complex communities.
Reference Key
openalex_W7170136199 Use this key to autocite in the manuscript while using SciMatic Manuscript Manager or Thesis Manager
Authors Shuotao Zhou, Kai Feng, J W Li, Q J He, Shang Wang, Si Luo, Qiulong Hu, Shaolong Wu, Ye Deng
Journal journal of plant ecology
Year 2026
DOI
10.1093/jpe/rtag167
URL
Keywords Keywords not found

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