maldipickr dereplicates microbial MALDI-TOF spectra to facilitate multiplexed isolation
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ID: 317741
2026
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Abstract
Abstract Motivation Microbiologists use MALDI-TOF for fast and cheap identification of microbial isolates. However, most standard procedures rely on a commercial database. Bioinformatic tools to dereplicate MALDI-TOF spectra have been developed, but an open and resource-efficient tool to reduce the redundancy of microbial isolates is lacking. Here we develop “maldipickr” for de novo-clustering of MALDI-TOF spectra to dereplicate and select isolates, and thereby facilitate large-scale cultivation projects. Availability and implementation The R package “maldipickr” is available through CRAN at https://doi.org/10.32614/CRAN.package.maldipickr along extensive documentation at https://clavellab.github.io/maldipickr.
| Reference Key |
openalex_W7165161047
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|---|---|
| Authors | Charlie Pauvert, David Wylensek, Selina Nüchtern, Thomas Clavel |
| Journal | Bioinformatics advances |
| Year | 2026 |
| DOI |
10.1093/bioadv/vbag171
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| URL | |
| Keywords | Keywords not found |
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