Whole-Genome Sequencing of and Multi-Omics Analysis in Response to Low Temperature.

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ID: 281322
2025
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Abstract
The growth of is strongly dependent on low-temperature cues for the initiation of primordia formation. To obtain a comprehensive understanding of the molecular mechanisms that govern the mycelial response to cold stress, de novo genome sequencing of the monokaryon and multi-omics data (transcriptome and metabolome) analyses of the mycelia, primordia, and fruiting bodies were conducted in the present study. Genome sequencing based on PacBio HiFi and Hi-C resulted in a 36.3 Mb genome sequence that mapped to 12 chromosomes, comprising 11,886 protein-coding genes. A total of 25 cold-responsive (COR) genes and 520 cold-adapted enzymes were identified in the genome. Multi-omics analyses showed that the pathways related to carbohydrate metabolism in the mycelia under low temperature (10 °C) were significantly enriched. Further examination of the expression profiles of carbohydrate-active enzymes (CAZymes) involved in carbohydrate metabolism revealed that out of 515 CAZyme genes in , 58 were specifically upregulated in mycelia under low-temperature conditions. By contrast, the expression levels of these genes in primordia and fruiting bodies reverted to those prior to low-temperature exposure. These indicate that CAZyme genes are important for the low-temperature adaptation of . This research contributes to the targeted breeding of .
Reference Key
liang2025wholegenomejournal Use this key to autocite in the manuscript while using SciMatic Manuscript Manager or Thesis Manager
Authors Liang, Xinmin;Han, Jing;Cui, Yuqin;Shu, Xueqin;Lei, Mengting;Wang, Bo;Jia, Dinghong;Peng, Weihong;He, Xiaolan;Liu, Xun;
Journal Journal of fungi (Basel, Switzerland)
Year 2025
DOI
229
URL
Keywords
transcriptome metabolome whole-genome sequencing cold adaptation flammulina filiformis

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