Whole-Genome Sequencing of and Multi-Omics Analysis in Response to Low Temperature.

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ID: 281322
2025
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Abstract
The growth of is strongly dependent on low-temperature cues for the initiation of primordia formation. To obtain a comprehensive understanding of the molecular mechanisms that govern the mycelial response to cold stress, de novo genome sequencing of the monokaryon and multi-omics data (transcriptome and metabolome) analyses of the mycelia, primordia, and fruiting bodies were conducted in the present study. Genome sequencing based on PacBio HiFi and Hi-C resulted in a 36.3 Mb genome sequence that mapped to 12 chromosomes, comprising 11,886 protein-coding genes. A total of 25 cold-responsive (COR) genes and 520 cold-adapted enzymes were identified in the genome. Multi-omics analyses showed that the pathways related to carbohydrate metabolism in the mycelia under low temperature (10 °C) were significantly enriched. Further examination of the expression profiles of carbohydrate-active enzymes (CAZymes) involved in carbohydrate metabolism revealed that out of 515 CAZyme genes in , 58 were specifically upregulated in mycelia under low-temperature conditions. By contrast, the expression levels of these genes in primordia and fruiting bodies reverted to those prior to low-temperature exposure. These indicate that CAZyme genes are important for the low-temperature adaptation of . This research contributes to the targeted breeding of .
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liang2025wholegenomejournal Use this key to autocite in the manuscript while using SciMatic Manuscript Manager or Thesis Manager
Authors Xinmin Liang, Jing Han, Yuqin Cui, Xueqin Shu, Mengting Lei, Bo Wang, Dinghong Jia, Weihong Peng, Xiaolan He, Xun Liu
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Journal Journal of fungi (Basel, Switzerland)
Year 2025
DOI
229
URL
Keywords
transcriptome metabolome whole-genome sequencing cold adaptation flammulina filiformis

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