Evolutionary Conservation of RNA Secondary Structure.

Clicks: 167
ID: 276275
2023
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Abstract
Noncoding RNAs, ncRNAs, naturally fold into structures, which allow them to perform their functions in the cell. Evolutionarily close species share structures and functions. This occurs because of shared selective pressures, resulting in conserved groups. Previous efforts in finding functional RNAs have been made in detecting conserved structures in genomes or alignments. It may occur that, within a conserved group, species-specific structures arise after species split due to positive selection. Detecting positive selection in ncRNAs is a hard problem in biology as well as bioinformatics. To detect positive selection, one should find species-specific structures within a conserved set. This chapter provides protocols to detect and analyze positive selection in ncRNA structures with the SSS-test and other free software.
Reference Key
walter-costa2023evolutionarymethods Use this key to autocite in the manuscript while using SciMatic Manuscript Manager or Thesis Manager
Authors Walter Costa, Maria Beatriz;
Journal Methods in molecular biology (Clifton, N.J.)
Year 2023
DOI
10.1007/978-1-0716-2768-6_8
URL
Keywords
secondary structure conservation evolution noncoding rna positive selection

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