Genome/transcriptome collection of plethora of economically important, previously unexplored organisms from India and abroad

Clicks: 156
ID: 263834
2019
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Abstract
Genome and transcriptome sequencing data are extremely useful resources for researchers in carrying out biological experiments that involves cloning and characterizing genes. We are presenting here genome sequence data from different clades of life including photosynthetic prokaryotes; oomycetes pathogens; probiotic bacteria; endophytic yeasts and filamentous fungus and pathogenic protozoa Leishmania donovani. In addition, we are also presenting paired control and treated stress response transcriptomes of Cyanobacteria growing in extreme conditions. The Cyanobacterial species that are included in this dataset were isolated from extreme conditions including desiccated monuments, hot springs and saline archipelagos. The probiotic Lactobacillus paracasei was isolated from Indian sub-continent. The Kala azar causing protozoan Leishmania donovani, whose early infectious stage is also included in this dataset. The endophyte Arthrinium malaysianum was isolated as a contaminant has significant bio-remediation property. Our collaborators have isolated endophyte Rhodotorula mucilaginosa JGTA1 from Jaduguda mines, West Bengal, India infested with Uranium. Our collaborators have isolated a heterozygous diploid oomycetes pathogen, Phytophthora ramorum causing sudden oak death in CA, USA coast is also part of the data. These dataset presents a unique heterogeneous collection from various sources that are analyzed using “Genome Annotator Light (GAL): A Docker-based package for genome analysis and visualization” (Panda et al., 2019) and are presented in a web site automatically created by GAL at http://www.eumicrobedb.org/cglab. Keywords: Annotation, Genome, Transcriptome
Reference Key
panda2019genometranscriptomedata Use this key to autocite in the manuscript while using SciMatic Manuscript Manager or Thesis Manager
Authors Panda, Arijit;Chaudhari, Narendrakumar M.;Mukherjee, Mayuri;Ghosh, Samrat;Sarangi, Aditya Narayan;Malar, C. Mathu;Kant, Shashi;Sen, Diya;Das, Abhishek;Das, Subhadeep;Singh, Deeksha;Prusty, Asharani;Tripathy, Sucheta;
Journal Data in brief
Year 2019
DOI
DOI not found
URL
http://www.sciencedirect.com/science/article/pii/S2352340919304536
Keywords
Ecology Microbiology Medicine Biotechnology Computer applications to medicine. Medical informatics Science (General) Science Agriculture (General) plant ecology agriculture plant culture genetics microbial ecology

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