analysis of metagenomics next generation sequence data for fungal its barcoding: do you need advance bioinformatics experience?

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ID: 214618
2016
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Abstract
During the last few decades, most of microbiology laboratories have become familiar in analyzing Sanger sequence data for ITS barcoding. However, with the availability of next-generation sequencing platforms in many centers, it has become important for medical mycologists to know how to make sense of the massive sequence data generated by these new sequencing technologies. In many reference laboratories, the analysis of such data is not a big deal, since suitable IT infrastructure and well-trained bioinformatics scientists are always available. However, in small research laboratories and clinical microbiology laboratories the availability of such resources are always lacking. In this report, simple and user-friendly bioinformatics work-flow is suggested for fast and reproducible ITS barcoding of fungi.
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ahmed2016frontiersanalysis Use this key to autocite in the manuscript while using SciMatic Manuscript Manager or Thesis Manager
Authors ;Abdalla Osman Abdalla Ahmed
Journal journal of magnetic resonance (san diego, calif : 1997)
Year 2016
DOI
10.3389/fmicb.2016.01061
URL
http://journal.frontiersin.org/Journal/10.3389/fmicb.2016.01061/full
Keywords
metagenomics next generation sequencing fungi

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