the genome and transcriptome of phalaenopsis yield insights into floral organ development and flowering regulation

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ID: 213882
2016
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Abstract
The Phalaenopsis orchid is an important potted flower of high economic value around the world. We report the 3.1 Gb draft genome assembly of an important winter flowering Phalaenopsis ‘KHM190’ cultivar. We generated 89.5 Gb RNA-seq and 113 million sRNA-seq reads to use these data to identify 41,153 protein-coding genes and 188 miRNA families. We also generated a draft genome for Phalaenopsis pulcherrima ‘B8802,’ a summer flowering species, via resequencing. Comparison of genome data between the two Phalaenopsis cultivars allowed the identification of 691,532 single-nucleotide polymorphisms. In this study, we reveal that the key role of PhAGL6b in the regulation of labellum organ development involves alternative splicing in the big lip mutant. Petal or sepal overexpressing PhAGL6b leads to the conversion into a lip-like structure. We also discovered that the gibberellin pathway that regulates the expression of flowering time genes during the reproductive phase change is induced by cool temperature. Our work thus depicted a valuable resource for the flowering control, flower architecture development, and breeding of the Phalaenopsis orchids.
Reference Key
huang2016peerjthe Use this key to autocite in the manuscript while using SciMatic Manuscript Manager or Thesis Manager
Authors ;Jian-Zhi Huang;Chih-Peng Lin;Ting-Chi Cheng;Ya-Wen Huang;Yi-Jung Tsai;Shu-Yun Cheng;Yi-Wen Chen;Chueh-Pai Lee;Wan-Chia Chung;Bill Chia-Han Chang;Shih-Wen Chin;Chen-Yu Lee;Fure-Chyi Chen
Journal pediatrics
Year 2016
DOI
10.7717/peerj.2017
URL
https://peerj.com/articles/2017/
Keywords
depression canada egypt cognitive culturemedicine flowering timemedicine

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