Immuno-MALDI MS dataset for improved detection of HCVcoreAg in sera

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ID: 106985
2019
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Abstract
Complicated and large-scale challenge the contemporary biomedical community faces are development of highly-sensitive analytical methods for detection of protein markers associated with development of pathogenic mechanisms [2]. The atomic force microscopy (AFM) method in combination with specific fishing is unique among other analytical protein detection approaches; it allows visualization and counting of single protein molecules [3–6]. The present dataset focus on mass spectrometry method for detection of human hepatitis C virus core antigen (HCV core Ag) taking into account the potential modification with cations in blood serum samples, using mica chips for the atomic force microscopy (AFM-chips). To conduct specific protein fishing, we used flat AFM-chips preliminary sensibilized with molecular probes – aptamers, which are single-stranded DNA sequences. In our study we used four types of aptamers up to 85 nucleotides specific against the target protein – HCVcoreAg [3,4]. Working (n = 19) and control (n = 11) AFM-chips with aptamers were preliminarily immobilized on the surface in four zones and incubated in blood serum samples (See Supplementary fig. 1). Analysis of MS data regarding modification of marker protein peptides with Na+, K+, K2Cl+, and Na2Cl + ions enables to enhance the reliability of target proteins detection in the serum thereby demonstrating a high diagnostic potential. Keywords: HCVcoreAg, Aptamer, Atomic force microscopy, Mass spectrometry, Biospecific fishing, MALDI-MS
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kaysheva2019immunomaldidata Use this key to autocite in the manuscript while using SciMatic Manuscript Manager or Thesis Manager
Authors Kaysheva, Anna L.;Pleshakova, Tatyana O.;Stepanov, Alexander A.;Ziborov, Vadim S.;Saravanabhavan, Shanmuga S.;Natesan, Balasubramanian;Archakov, Alexander I.;Ivanov, Yurii D.;
Journal Data in brief
Year 2019
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http://www.sciencedirect.com/science/article/pii/S2352340919305943
Keywords
chemistry Organic Chemistry Biology (General) Botany Medicine Biotechnology Computer applications to medicine. Medical informatics Science (General) Science fuel plant culture genetics cytology animal biochemistry

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