XitoSBML: A Modeling Tool for Creating Spatial Systems Biology Markup Language Models From Microscopic Images.

Clicks: 194
ID: 101192
2019
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Abstract
XitoSBML is a software tool designed to create an SBML (Systems Biology Markup Language) Level 3 Version 1 document from microscopic cellular images. It is implemented as an ImageJ plug-in and is designed to create spatial models that reflect the three-dimensional cellular geometry. With XitoSBML, users can perform spatial model simulations based on realistic cellular geometry by using SBML-supported software tools, including simulators such as Virtual Cell and Spatial Simulator. XitoSBML is open-source and is available at https://github.com/spatialsimulator/XitoSBML/. XitoSBML is confirmed to run on most 32/64-bit operating systems: Windows, MacOS, and Linux.
Reference Key
ii2019xitosbmlfrontiers Use this key to autocite in the manuscript while using SciMatic Manuscript Manager or Thesis Manager
Authors Ii, Kaito;Mashimo, Kota;Ozeki, Mitsunori;Yamada, Takahiro G;Hiroi, Noriko;Funahashi, Akira;
Journal Frontiers in genetics
Year 2019
DOI
10.3389/fgene.2019.01027
URL
Keywords
Image processing ImageJ spatial modeling spatial model simulation systems biology markup language

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